C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310137 RBM14-001 ENSG00000239306 9606 + 11:66616582-66627347 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310137
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310137 15.182±0.00 10.618±0.00 2.511±0.00 8.768±0.00 18.499±0.00 11.434±0.00 5.698±3.19 15.771±9.61 10.772±0.00 26.232±0.00 7.201±3.69 25.109±6.09 17.997±3.74 25.095±4.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YI CIL_0003YI_0002 CGP 11:66592821-66627347

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001104 NAS RNA polymerase II transcription cofactor activity
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0006260 NAS DNA replication
GO:0006281 NAS DNA repair
GO:0006310 NAS DNA recombination
GO:0006366 NAS transcription from RNA polymerase II promoter
GO:0009725 TAS response to hormone
GO:0016575 IPI histone deacetylation
GO:0016592 NAS mediator complex
GO:0030374 IPI ligand-dependent nuclear receptor transcription coactivator activity
GO:0030520 NAS intracellular estrogen receptor signaling pathway
GO:0030529 TAS ribonucleoprotein complex
GO:0030674 NAS protein binding, bridging
GO:0042921 NAS glucocorticoid receptor signaling pathway
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006625 Rbm14-001 protein_coding Mus_musculus 0 3871
ENSMUST00000113793 Rbm14-002 protein_coding Mus_musculus 0 2734
ENSMUST00000178353 Gm21992-004 nonsense_mediated_decay Mus_musculus 0 599
ENSMUST00000178727 Gm21992-003 retained_intron Mus_musculus 0 582
ENSMUST00000180008 Rbm14-003 protein_coding Mus_musculus 0 475
ENSMUST00000172000 Gm21992-001 protein_coding Mus_musculus 0 468
ENSMUST00000179909 Gm21992-002 protein_coding Mus_musculus 0 468
ENSMUST00000177776 Gm21992-006 processed_transcript Mus_musculus 0 444

Loading