C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: RBM14-RBM4 readthrough
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000421355 RBM14-RBM4-003 ENSG00000248643 9606 + 11:66616631-66644632 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENST00000421355
Transcript ID Colon
ENST00000421355 8.032±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YI CIL_0003YI_0002 CGP 11:66592821-66627347
CIL_0003YM CIL_0003YM_0004 CGP 11:66616626-66666682

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172000 Gm21992-001 protein_coding Mus_musculus 0 2054
ENSMUST00000180248 Rbm4-001 protein_coding Mus_musculus 0 1611
ENSMUST00000179189 Rbm4-004 protein_coding Mus_musculus 0 1051
ENSMUST00000179909 Gm21992-002 protein_coding Mus_musculus 0 1031
ENSMUST00000182821 Rbm4b-004 retained_intron Mus_musculus 0 1027
ENSMUST00000036744 Rbm4b-001 protein_coding Mus_musculus 0 1018
ENSMUST00000164376 Rbm4-005 protein_coding Mus_musculus 0 776
ENSMUST00000183008 Rbm4b-005 processed_transcript Mus_musculus 0 616
ENSMUST00000182200 Rbm4b-002 nonsense_mediated_decay Mus_musculus 0 612
ENSMUST00000182065 Rbm4b-003 retained_intron Mus_musculus 0 612
ENSMUST00000178727 Gm21992-003 retained_intron Mus_musculus 0 588
ENSMUST00000179820 Rbm4-003 retained_intron Mus_musculus 0 588
ENSMUST00000164209 Rbm4-006 protein_coding Mus_musculus 0 588
ENSMUST00000178615 Rbm4-002 protein_coding Mus_musculus 0 588
ENSMUST00000178353 Gm21992-004 nonsense_mediated_decay Mus_musculus 0 575
ENSMUST00000006625 Rbm14-001 protein_coding Mus_musculus 0 573
ENSMUST00000113793 Rbm14-002 protein_coding Mus_musculus 0 555
ENSMUST00000180008 Rbm14-003 protein_coding Mus_musculus 0 477
ENSMUST00000183332 Rbm4b-007 retained_intron Mus_musculus 0 427
ENSMUST00000177776 Gm21992-006 processed_transcript Mus_musculus 0 276

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