C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RBM14-RBM4 readthrough
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412278 RBM14-RBM4-004 ENSG00000248643 9606 + 11:66616626-66646469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisENST00000412278
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENST00000412278 22.746±0.00 19.213±0.00 13.139±0.00 28.365±0.00 26.169±0.00 14.835±0.00 36.072±0.00 16.547±0.00 43.486±0.00 18.500±0.00 18.655±2.84 36.870±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YI CIL_0003YI_0002 CGP 11:66592821-66627347
CIL_0003YM CIL_0003YM_0004 CGP 11:66616626-66666682

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179909 Gm21992-002 protein_coding Mus_musculus 0 1831
ENSMUST00000180248 Rbm4-001 protein_coding Mus_musculus 0 1369
ENSMUST00000172000 Gm21992-001 protein_coding Mus_musculus 0 1014
ENSMUST00000178727 Gm21992-003 retained_intron Mus_musculus 0 584
ENSMUST00000178353 Gm21992-004 nonsense_mediated_decay Mus_musculus 0 584
ENSMUST00000006625 Rbm14-001 protein_coding Mus_musculus 0 582
ENSMUST00000113793 Rbm14-002 protein_coding Mus_musculus 0 555
ENSMUST00000180008 Rbm14-003 protein_coding Mus_musculus 0 477
ENSMUST00000179189 Rbm4-004 protein_coding Mus_musculus 0 472
ENSMUST00000036744 Rbm4b-001 protein_coding Mus_musculus 0 418
ENSMUST00000183332 Rbm4b-007 retained_intron Mus_musculus 0 416
ENSMUST00000182821 Rbm4b-004 retained_intron Mus_musculus 0 416
ENSMUST00000182200 Rbm4b-002 nonsense_mediated_decay Mus_musculus 0 412
ENSMUST00000178404 Gm21992-005 protein_coding Mus_musculus 0 346
ENSMUST00000178615 Rbm4-002 protein_coding Mus_musculus 0 346
ENSMUST00000164209 Rbm4-006 protein_coding Mus_musculus 0 296
ENSMUST00000164376 Rbm4-005 protein_coding Mus_musculus 0 196

Loading