C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptogyrin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007236 Syngr3-001 ENSMUSG00000007021 10090 - 17:24685092-24689955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007236
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007236 0.183±0.08 1.577±0.53 0.280±0.01 31.258±4.18 0.257±0.07 2.089±0.34 0.241±0.07 0.307±0.09 0.056±0.02 0.249±0.10 0.046±0.01 0.551±0.32 0.100±0.06 0.091±0.05

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0008021 IDA synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0021762 IEA substantia nigra development
GO:0030054 IEA cell junction
GO:0031594 IDA neuromuscular junction
GO:0032411 IMP positive regulation of transporter activity
GO:0042169 IDA SH2 domain binding
GO:0045202 IDA synapse
GO:0047485 IPI protein N-terminus binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000248121 SYNGR3-001 protein_coding Homo_sapiens 0 798
ENST00000562045 SYNGR3-005 protein_coding Homo_sapiens 0 688
ENST00000563869 SYNGR3-003 protein_coding Homo_sapiens 0 667
ENST00000564642 SYNGR3-006 retained_intron Homo_sapiens 0 464
ENST00000618464 SYNGR3-201 protein_coding Homo_sapiens 0 307

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