C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptogyrin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000248121 SYNGR3-001 ENSG00000127561 9606 + 16:1989945-1994275 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyOvaryPlacentaTestisENST00000248121
Transcript ID Brain Colon Kidney Ovary Placenta Testis
ENST00000248121 11.470±0.00 1.426±0.00 0.336±0.00 0.213±0.06 1.124±0.78 0.648±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00029B CIL_00029B_0002 CGP 16:1984207-1994275
CIL_00029C CIL_00029C_0002 CGP 16:1989660-2009823

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008021 ISS synaptic vesicle
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0021762 IEP substantia nigra development
GO:0030054 IEA cell junction
GO:0031594 IEA neuromuscular junction
GO:0032411 ISS positive regulation of transporter activity
GO:0042169 IEA SH2 domain binding
GO:0045202 IEA synapse
GO:0047485 IEA protein N-terminus binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007236 Syngr3-001 protein_coding Mus_musculus 0 798

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