C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009789 P4ha1-001 ENSMUSG00000019916 10090 + 10:59323296-59373304 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009789
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009789 1.909±0.74 1.230±0.26 4.022±0.12 1.183±0.48 1.582±0.28 1.031±0.21 2.048±0.16 2.388±0.42 0.864±0.20 2.758±0.32 1.491±0.37 3.119±0.73 6.056±3.20 0.695±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QA CIL_0008QA_0002 VISTA 10:59142760-59744333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004656 IMP procollagen-proline 4-dioxygenase activity
GO:0005506 IEA iron ion binding
GO:0005739 IEA mitochondrion
GO:0016020 IEA membrane
GO:0016222 IDA procollagen-proline 4-dioxygenase complex
GO:0016702 IEA oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0018401 IDA peptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0030199 IMP collagen fibril organization
GO:0031418 IEA L-ascorbic acid binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263556 P4HA1-201 protein_coding Homo_sapiens 0 1967
ENST00000307116 P4HA1-001 protein_coding Homo_sapiens 0 2074
ENST00000373008 P4HA1-002 protein_coding Homo_sapiens 0 1947
ENST00000394890 P4HA1-202 protein_coding Homo_sapiens 0 2095
ENST00000440381 P4HA1-203 protein_coding Homo_sapiens 0 1424

Loading