C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, Shal-related family, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009875 Kcnd1-001 ENSMUSG00000009731 10090 + X:7822289-7838280 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009875
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009875 0.670±0.35 0.496±0.09 0.903±0.09 0.166±0.00 0.681±0.29 0.791±0.18 0.133±0.09 0.101±0.10 0.163±0.15 0.210±0.16 0.058±0.03 1.081±0.49 0.557±0.26 0.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003U6 CIL_0003U6_0002 CGP X:7789765-7838280

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005251 IBA delayed rectifier potassium channel activity
GO:0008076 IEA voltage-gated potassium channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0042995 IEA cell projection
GO:0043025 IEA neuronal cell body
GO:0046872 IEA metal ion binding
GO:0051260 IEA protein homooligomerization
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000218176 KCND1-001 protein_coding Homo_sapiens 0 2937
ENST00000302127 KCND3-201 protein_coding Homo_sapiens 0 651
ENST00000315987 KCND3-001 protein_coding Homo_sapiens 0 651
ENST00000369697 KCND3-002 protein_coding Homo_sapiens 0 651
ENST00000376477 KCND1-002 protein_coding Homo_sapiens 0 1504

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