C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, Shal-related subfamily, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000218176 KCND1-001 ENSG00000102057 9606 - X:48961386-48971569 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000218176
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000218176 0.864±0.00 0.996±0.00 0.988±0.88 0.494±0.00 0.853±0.00 0.195±0.00 0.706±0.00 0.165±0.01 0.419±0.38 0.102±0.00 1.084±0.87 0.471±0.07 1.190±0.55

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005249 IEA voltage-gated potassium channel activity
GO:0005251 IBA delayed rectifier potassium channel activity
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005886 TAS plasma membrane
GO:0006811 IEA ion transport
GO:0007268 TAS synaptic transmission
GO:0008076 IEA voltage-gated potassium channel complex
GO:0016020 IEA membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0042995 IEA cell projection
GO:0043025 IEA neuronal cell body
GO:0046872 IEA metal ion binding
GO:0051260 IEA protein homooligomerization
GO:0055085 IEA transmembrane transport
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009875 Kcnd1-001 protein_coding Mus_musculus 0 2937
ENSMUST00000079169 Kcnd3-201 protein_coding Mus_musculus 0 630
ENSMUST00000118360 Kcnd3-001 protein_coding Mus_musculus 0 630
ENSMUST00000141694 Kcnd3-003 retained_intron Mus_musculus 0 630
ENSMUST00000098761 Kcnd3-002 protein_coding Mus_musculus 0 630

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