C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, Shal-related subfamily, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369697 KCND3-002 ENSG00000171385 9606 - 1:111770662-111982796 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369697
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369697 1.625±0.00 3.288±0.00 0.024±0.00 9.680±5.36 3.940±0.00 1.268±1.18 2.830±2.50 1.610±0.44 3.025±0.76 0.470±0.14 0.433±0.24 0.353±0.20 0.297±0.14 0.902±0.78

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005250 IBA A-type (transient outward) potassium channel activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006811 IEA ion transport
GO:0006813 TAS potassium ion transport
GO:0007268 TAS synaptic transmission
GO:0008076 IDA voltage-gated potassium channel complex
GO:0008219 IEA cell death
GO:0016020 IEA membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0044325 IPI ion channel binding
GO:0046872 IEA metal ion binding
GO:0051260 IEA protein homooligomerization
GO:0055085 IEA transmembrane transport
GO:0071435 IDA potassium ion export
GO:0086009 IDA membrane repolarization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098761 Kcnd3-002 protein_coding Mus_musculus 0 3387
ENSMUST00000118360 Kcnd3-001 protein_coding Mus_musculus 0 1989
ENSMUST00000141694 Kcnd3-003 retained_intron Mus_musculus 0 1989
ENSMUST00000079169 Kcnd3-201 protein_coding Mus_musculus 0 1967
ENSDART00000042673 kcnd2-201 protein_coding Danio_rerio 0 869
ENSDART00000138890 kcnd2-001 protein_coding Danio_rerio 0 869
ENSMUST00000009875 Kcnd1-001 protein_coding Mus_musculus 0 651
ENSMUST00000147209 Kcnd3-004 processed_transcript Mus_musculus 0 224

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