C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neural precursor cell expressed, developmentally down-regulated gene 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000010520 Nedd8-201 ENSMUSG00000010376 10090 - 14:55662267-55671906 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000010520
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000010520 141.614±25.17 92.005±7.53 194.285±7.58 156.495±97.78 119.345±45.95 82.892±11.37 104.314±6.42 150.597±21.71 156.820±87.27 99.799±15.13 74.986±2.68 111.262±37.27 135.554±91.14 84.367±37.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00029W CIL_00029W_0002 CGP 14:55657879-55671906
CIL_0002AC CIL_0002AC_0002 CGP 14:55662265-55678750

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008104 IDA protein localization
GO:0014070 IEA response to organic cyclic compound
GO:0031625 IEA ubiquitin protein ligase binding
GO:0045116 ISS protein neddylation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000250495 NEDD8-001 protein_coding Homo_sapiens 0 671
ENST00000396828 NEDD8-002 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000441775 RP11-82H13.2-001 processed_pseudogene Homo_sapiens 0 309
ENST00000524927 NEDD8-004 protein_coding Homo_sapiens 0 257
ENST00000526430 NEDD8-007 processed_transcript Homo_sapiens 0 237
ENST00000527046 NEDD8-005 processed_transcript Homo_sapiens 0 590
ENST00000530579 NEDD8-MDP1-004 nonsense_mediated_decay Homo_sapiens 0 226
ENST00000531430 NEDD8-006 processed_transcript Homo_sapiens 0 590
ENST00000534348 NEDD8-MDP1-001 protein_coding Homo_sapiens 0 255
ENST00000560427 NEDD8-008 retained_intron Homo_sapiens 0 435
ENST00000604306 NEDD8-MDP1-003 processed_transcript Homo_sapiens 9.00054e-42 174
ENST00000605847 NEDD8-MDP1-002 nonsense_mediated_decay Homo_sapiens 0 320

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