C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neural precursor cell expressed, developmentally down-regulated 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000250495 NEDD8-001 ENSG00000129559 9606 - 14:24216852-24232454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000250495
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000250495 147.769±0.00 367.500±0.00 21.197±0.00 191.596±132.26 106.746±80.09 138.916±0.00 100.481±83.50 233.636±197.10 70.138±53.53 325.983±0.00 40.754±19.57 188.238±141.05 305.196±102.39 235.553±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00029W CIL_00029W_0001 CGP 14:24213955-24232454
CIL_0002AC CIL_0002AC_0001 CGP 14:24216852-24239242

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006464 TAS cellular protein modification process
GO:0006508 TAS proteolysis
GO:0006511 TAS ubiquitin-dependent protein catabolic process
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0008104 IEA protein localization
GO:0009653 TAS anatomical structure morphogenesis
GO:0014070 IEA response to organic cyclic compound
GO:0031625 IPI ubiquitin protein ligase binding
GO:0045116 IDA protein neddylation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000010520 Nedd8-201 protein_coding Mus_musculus 0 671
ENSMUST00000163750 Nedd8-202 protein_coding Mus_musculus 0 435

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