C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000013773 Cad-001 ENSMUSG00000013629 10090 + 5:31054780-31078479 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000013773
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000013773 10.032±5.91 6.578±0.95 4.452±0.16 7.879±4.97 12.385±5.12 11.213±0.92 2.275±1.04 3.022±0.60 5.528±4.12 7.324±0.82 1.111±0.55 19.168±7.66 5.756±4.24 3.243±1.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EH CIL_0000EH_0002 CGP 5:31048312-31078479
CIL_0000EG CIL_0000EG_0002 CGP 5:31054780-31108237

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001889 IEA liver development
GO:0004070 IEA aspartate carbamoyltransferase activity
GO:0004088 IEA carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0004151 ISS dihydroorotase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005829 IEA cytosol
GO:0006207 ISS 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006228 IEA UTP biosynthetic process
GO:0006541 IEA glutamine metabolic process
GO:0006543 IEA glutamine catabolic process
GO:0007507 IEA heart development
GO:0007565 IEA female pregnancy
GO:0007595 IEA lactation
GO:0008270 ISS zinc ion binding
GO:0014075 IEA response to amine
GO:0016020 IEA membrane
GO:0016363 IEA nuclear matrix
GO:0016597 IEA amino acid binding
GO:0017144 IEA drug metabolic process
GO:0019899 IEA enzyme binding
GO:0031000 IEA response to caffeine
GO:0031100 IEA organ regeneration
GO:0033574 IEA response to testosterone
GO:0035690 IEA cellular response to drug
GO:0042802 IEA identical protein binding
GO:0042995 IEA cell projection
GO:0043025 IEA neuronal cell body
GO:0043195 IEA terminal bouton
GO:0043234 IEA protein complex
GO:0044205 IEA 'de novo' UMP biosynthetic process
GO:0051414 IEA response to cortisol
GO:0070062 IEA extracellular vesicular exosome
GO:0070409 IEA carbamoyl phosphate biosynthetic process
GO:0071364 IEA cellular response to epidermal growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264705 CAD-001 protein_coding Homo_sapiens 0 8342
ENST00000403525 CAD-002 protein_coding Homo_sapiens 0 5843
ENST00000428460 CAD-011 protein_coding Homo_sapiens 0 627
ENST00000456311 CAD-004 protein_coding Homo_sapiens 0 392
ENST00000458503 CAD-008 protein_coding Homo_sapiens 0 839
ENST00000464159 CAD-003 processed_transcript Homo_sapiens 0 641
ENST00000475695 CAD-006 retained_intron Homo_sapiens 0 414
ENST00000479002 CAD-007 retained_intron Homo_sapiens 0 470
ENST00000491891 CAD-005 retained_intron Homo_sapiens 0 442

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