C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ankyrin repeat domain 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000014421 Ankrd17-201 ENSMUSG00000055204 10090 - 5:90227190-90366185 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000014421
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000014421 3.630±0.42 3.640±0.55 1.804±0.20 6.425±2.66 3.877±1.35 3.155±0.55 2.456±0.68 2.950±0.41 1.992±0.40 3.225±0.37 2.120±0.39 5.195±2.94 13.179±5.88 2.285±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D1 CIL_0000D1_0002 CGP 5:90214724-90366185

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001955 IMP blood vessel maturation
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0007492 TAS endoderm development
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding
GO:0051151 IMP negative regulation of smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128291 arid4a-201 protein_coding Danio_rerio 0.000004 60
ENSDART00000103228 arid4a-002 protein_coding Danio_rerio 0.000004 60
ENSDART00000064412 arid4a-001 protein_coding Danio_rerio 0.000004 60
ENSDART00000151847 arid4a-003 protein_coding Danio_rerio 0.000004 60
ENST00000330838 ANKRD17-002 protein_coding Homo_sapiens 0 7740
ENST00000358602 ANKRD17-001 protein_coding Homo_sapiens 0 12380
ENST00000509867 ANKRD17-003 protein_coding Homo_sapiens 0 11740
ENST00000510127 ANKRD17-009 processed_transcript Homo_sapiens 0 617
ENST00000513908 ANKRD17-010 retained_intron Homo_sapiens 0 856
ENST00000514252 ANKRD17-004 processed_transcript Homo_sapiens 0 3938
ENST00000558247 ANKRD17-012 protein_coding Homo_sapiens 0 11930
ENST00000559367 ANKRD17-015 processed_transcript Homo_sapiens 0 237
ENST00000561029 ANKRD17-011 protein_coding Homo_sapiens 0 3315

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