C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GLIS family zinc finger 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000014447 Glis2-001 ENSMUSG00000014303 10090 + 16:4594713-4615957 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000014447
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000014447 13.252±5.65 8.675±0.67 17.512±1.04 9.172±6.54 7.915±1.67 6.048±0.23 5.572±0.11 68.365±5.95 1.603±0.98 26.016±2.10 1.229±0.11 16.375±12.45 6.218±3.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WQ CIL_0000WQ_0002 CGP 16:4544661-4624924
CIL_00009U CIL_00009U_0002 CGP 16:4594713-4624988

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 ISS transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 ISS regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0016607 IDA nuclear speck
GO:0030154 IEA cell differentiation
GO:0043433 IDA negative regulation of sequence-specific DNA binding transcription factor activity
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045879 IMP negative regulation of smoothened signaling pathway
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262366 GLIS2-001 protein_coding Homo_sapiens 0 1821
ENST00000433375 GLIS2-201 protein_coding Homo_sapiens 0 1821
ENST00000612491 GLIS2-202 protein_coding Homo_sapiens 0 1827

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