C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000WQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000090447-ENSG00000126603 CGP 9606 16:4257186-4339597
GeneTranscriptPositionBiotype
ENSG00000090447 (TFAP4)
transcription factor AP-4 (activating enhancer binding protein 4) 		ENST00000204517 (TFAP4-001) 4257186-4273075 protein_coding
ENST00000572393 (TFAP4-007) 4261779-4263737 protein_coding
ENST00000573476 (TFAP4-006) 4260455-4272831 nonsense_mediated_decay
ENST00000574639 (TFAP4-005) 4258189-4272894 nonsense_mediated_decay
ENST00000575300 (TFAP4-002) 4260498-4273075 retained_intron
ENST00000575320 (TFAP4-003) 4257187-4267187 retained_intron
ENST00000575672 (TFAP4-004) 4257186-4258798 retained_intron
ENSG00000126603 (GLIS2)
GLIS family zinc finger 2 		ENST00000262366 (GLIS2-001) 4314761-4339597 protein_coding
ENST00000433375 (GLIS2-201) 4332224-4339597 protein_coding
ENSG00000217930 (PAM16)
presequence translocase-associated motor 16 homolog (S. cerevisiae) 		ENST00000318059 (PAM16-001) 4340248-4351372 protein_coding
ENST00000571178 (PAM16-004) 4340318-4351293 nonsense_mediated_decay
ENST00000571819 (PAM16-008) 4341652-4343693 processed_transcript
ENST00000571941 (PAM16-012) 4340251-4345904 protein_coding
ENST00000571986 (PAM16-010) 4340251-4351315 nonsense_mediated_decay
ENST00000573236 (PAM16-016) 4340249-4343550 retained_intron
ENST00000573450 (PAM16-009) 4340251-4343624 processed_transcript
ENST00000573553 (PAM16-015) 4340251-4343761 protein_coding
ENST00000573614 (PAM16-013) 4340251-4351270 processed_transcript
ENST00000575636 (PAM16-006) 4340251-4351055 nonsense_mediated_decay
ENST00000575848 (PAM16-014) 4340251-4344133 protein_coding
ENST00000575884 (PAM16-011) 4345290-4345978 processed_transcript
ENST00000575942 (PAM16-003) 4345290-4351320 processed_transcript
ENST00000576217 (PAM16-002) 4340251-4355607 protein_coding
ENST00000577031 (PAM16-005) 4331549-4351265 protein_coding
ENSG00000262686 (AC005356.1)
 ENST00000576080 (AC005356.1-001) 4324667-4328340 lincRNA
ENSG00000262712 (RP11-295D4.1)
 ENST00000574705 (RP11-295D4.1-001) 4335870-4337818 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0000WQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005718-ENSMUSG00000014303 CGP 10090 16:4544661-4624924
GeneTranscriptPositionBiotype
ENSMUSG00000005718 (Tfap4)
transcription factor AP4 		ENSMUST00000005862 (Tfap4-201) 4544661-4559720 protein_coding
ENSMUSG00000014301 (Pam16)
presequence translocase-asssociated motor 16 homolog (S. cerevisiae) 		ENSMUST00000014445 (Pam16-001) 4616464-4624988 protein_coding
ENSMUST00000131250 (Pam16-004) 4616464-4616988 retained_intron
ENSMUST00000139534 (Pam16-002) 4616602-4618154 retained_intron
ENSMUST00000156889 (Pam16-003) 4616464-4624936 nonsense_mediated_decay
ENSMUSG00000014303 (Glis2)
GLIS family zinc finger 2 		ENSMUST00000014447 (Glis2-001) 4594713-4615957 protein_coding
ENSMUST00000122896 (Glis2-002) 4608627-4615942 retained_intron
ENSMUST00000127120 (Glis2-005) 4611628-4624924 processed_transcript
ENSMUST00000135577 (Glis2-004) 4611410-4613656 retained_intron
ENSMUST00000141682 (Glis2-003) 4601163-4610413 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000WQ_0001ENSG00000090447ENST00000204517ENST00000572393ENST00000573476ENST00000574639ENST00000575300ENST00000575320ENST00000575672ENSG00000126603ENST00000262366ENST00000433375ENSG00000217930ENST00000318059ENST00000571178ENST00000571819ENST00000571941ENST00000571986ENST00000573236ENST00000573450ENST00000573553ENST00000573614ENST00000575636ENST00000575848ENST00000575884ENST00000575942ENST00000576217ENST00000577031ENSG00000262686ENST00000576080ENSG00000262712ENST00000574705CIL_0000WQ_0002ENSMUSG00000005718ENSMUST00000005862ENSMUSG00000014301ENSMUST00000014445ENSMUST00000131250ENSMUST00000139534ENSMUST00000156889ENSMUSG00000014303ENSMUST00000014447ENSMUST00000122896ENSMUST00000127120ENSMUST00000135577ENSMUST00000141682
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000WQ_0001ENSG00000090447ENST00000204517ENST00000572393ENST00000573476ENST00000575300ENST00000575320ENST00000575672ENSG00000126603ENST00000262366ENST00000433375ENSG00000217930ENST00000318059ENST00000571178ENST00000575848ENST00000576217ENST00000577031ENSG00000262686ENST00000576080ENSG00000262712ENST00000574705CIL_0000WQ_0002ENSMUSG00000005718ENSMUST00000005862ENSMUSG00000014301ENSMUST00000014445ENSMUST00000131250ENSMUST00000156889ENSMUSG00000014303ENSMUST00000014447ENSMUST00000122896
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000090447 ENST00000204517 3.058±0.00 1.392±0.00 0.086±0.00 0.758±0.00 0.954±0.38 2.972±0.00 0.114±0.03 1.089±0.51 0.492±0.25 0.952±0.33 2.870±0.00 8.765±5.58 3.338±1.15 1.409±0.61
ENST00000572393 6.590±0.00 N/A N/A 1.029±0.00 1.455±0.00 6.255±0.00 N/A 2.248±0.00 1.786±0.00 N/A 8.505±0.00 4.893±3.36 N/A N/A
ENST00000573476 N/A N/A 0.475±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575300 N/A N/A 0.419±0.00 0.645±0.00 N/A 0.886±0.00 0.165±0.00 1.405±0.00 N/A 0.442±0.00 0.876±0.00 0.543±0.00 N/A N/A
ENST00000575320 N/A N/A N/A N/A 0.173±0.00 N/A 0.024±0.00 0.193±0.00 0.109±0.00 N/A N/A N/A N/A 0.199±0.00
ENST00000575672 N/A N/A N/A 0.402±0.00 N/A 0.420±0.00 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000126603 ENST00000262366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.180±0.00 N/A N/A
ENST00000433375 3.010±0.00 7.430±0.00 0.514±0.00 1.423±1.36 7.616±0.00 3.689±3.58 1.687±1.49 7.998±7.91 0.441±0.10 10.490±9.54 0.374±0.14 28.212±24.61 6.675±2.58 6.114±3.14
ENSG00000217930 ENST00000318059 N/A N/A N/A N/A N/A N/A 5.509±3.08 N/A 2.641±0.00 2.148±0.00 14.534±11.92 N/A N/A N/A
ENST00000571178 N/A N/A N/A N/A N/A N/A N/A N/A 14.206±0.00 N/A N/A 109.491±0.00 36.022±0.00 114.263±0.00
ENST00000571819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575848 N/A N/A N/A 3.432±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576217 10.403±0.00 N/A N/A N/A N/A 9.807±0.00 10.561±0.00 N/A 16.814±0.00 N/A 11.945±8.46 31.296±0.00 29.305±5.77 32.361±0.00
ENST00000577031 N/A N/A N/A N/A N/A N/A N/A 3.383±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000262686 ENST00000576080 0.133±0.00 0.793±0.00 N/A 0.592±0.00 1.186±0.00 0.283±0.00 0.133±0.00 1.909±0.00 N/A 0.071±0.00 N/A 0.454±0.26 0.520±0.00 0.201±0.00
ENSG00000262712 ENST00000574705 2.876±0.00 5.554±0.00 N/A 1.178±0.73 3.136±2.99 2.511±2.40 1.630±0.00 6.855±0.00 0.346±0.11 9.190±0.00 0.555±0.00 10.252±13.25 3.862±1.29 4.366±3.44
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005718 ENSMUST00000005862 3.906±2.24 0.708±0.17 2.865±0.17 3.705±2.24 2.767±1.15 5.504±0.80 0.575±0.14 1.851±0.20 3.447±3.03 2.229±0.27 1.555±0.48 4.683±1.56 1.390±1.09 0.422±0.22
ENSMUSG00000014301 ENSMUST00000014445 31.461±0.12 58.317±8.76 39.408±5.65 53.583±27.17 38.941±4.13 30.849±6.94 37.641±9.04 N/A 39.441±17.83 N/A 47.659±2.45 58.285±13.26 23.967±7.91 124.724±38.62
ENSMUST00000131250 N/A N/A N/A 20.592±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 21.760±0.00 N/A
ENSMUST00000139534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156889 N/A N/A N/A 26.720±0.00 N/A 63.697±10.02 N/A N/A 16.774±0.90 N/A N/A 115.597±0.00 20.454±1.87 65.942±0.00
ENSMUSG00000014303 ENSMUST00000014447 13.252±5.65 8.675±0.67 17.512±1.04 9.172±6.54 7.915±1.67 6.048±0.23 5.572±0.11 68.365±5.95 1.603±0.98 26.016±2.10 1.229±0.11 16.375±12.45 6.218±3.00 N/A
ENSMUST00000122896 N/A 2.926±0.38 N/A 2.309±0.53 2.052±0.06 1.601±0.00 N/A N/A N/A 6.949±0.64 N/A 3.976±1.57 1.920±0.00 N/A
ENSMUST00000127120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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