C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GLIS family zinc finger 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262366 GLIS2-001 ENSG00000126603 9606 + 16:4314761-4339597 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000262366
Transcript ID Ovary
ENST00000262366 0.180±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WQ CIL_0000WQ_0001 CGP 16:4257186-4339597
CIL_00009U CIL_00009U_0001 CGP 16:4314761-4355607

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0001077 ISS RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0016607 ISS nuclear speck
GO:0030154 IEA cell differentiation
GO:0043433 ISS negative regulation of sequence-specific DNA binding transcription factor activity
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045879 ISS negative regulation of smoothened signaling pathway
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000014447 Glis2-001 protein_coding Mus_musculus 0 1821
ENSMUST00000122896 Glis2-002 retained_intron Mus_musculus 0 1066
ENSMUST00000135577 Glis2-004 retained_intron Mus_musculus 0 538
ENSDART00000113447 OTTDARG00000032278-201 protein_coding Danio_rerio 0 444
ENSMUST00000127120 Glis2-005 processed_transcript Mus_musculus 0 220

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