C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP3 pre-mRNA processing factor 3 homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000015892 Prpf3-001 ENSMUSG00000015748 10090 - 3:95830124-95855885 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015892
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015892 2.793±0.90 0.706±0.28 3.715±0.22 4.942±2.53 1.551±0.80 1.144±0.54 1.980±0.57 1.688±0.41 6.759±6.06 2.396±1.11 1.117±0.40 1.129±0.59 5.278±2.67 2.774±1.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000244 ISS spliceosomal tri-snRNP complex assembly
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0015030 IEA Cajal body
GO:0042802 IEA identical protein binding
GO:0044822 IEA poly(A) RNA binding
GO:0046540 IEA U4/U6 x U5 tri-snRNP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324862 PRPF3-001 protein_coding Homo_sapiens 0 3147
ENST00000467329 PRPF3-007 processed_transcript Homo_sapiens 0 1681
ENST00000470824 PRPF3-005 processed_transcript Homo_sapiens 0 440
ENST00000476970 PRPF3-004 processed_transcript Homo_sapiens 0 198
ENST00000496202 PRPF3-002 processed_transcript Homo_sapiens 0 715
ENST00000519029 RP11-409C19.2-001 processed_pseudogene Homo_sapiens 0 1797

Loading