C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000519029 RP11-409C19.2-001 ENSG00000253223 9606 - 8:66984135-66986187 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLungOvaryPlacentaTestisENST00000519029
Transcript ID Adipose Bladder Brain Breast Heart Kidney Lung Ovary Placenta Testis
ENST00000519029 0.032±0.00 0.016±0.00 0.014±0.00 0.041±0.00 0.071±0.00 0.116±0.00 0.019±0.00 0.061±0.03 0.027±0.00 0.485±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BD CIL_0003BD_0001 CGP 8:66946501-67056604
CIL_0003BC CIL_0003BC_0001 CGP 8:66964099-67083783

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161476 Prpf3-002 protein_coding Mus_musculus 0 1797
ENSMUST00000015892 Prpf3-001 protein_coding Mus_musculus 0 1797
ENSMUST00000160155 Prpf3-003 retained_intron Mus_musculus 0 1356
ENSMUST00000161482 Prpf3-009 processed_transcript Mus_musculus 0 593
ENSMUST00000120923 Gm11809-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000161420 Prpf3-007 retained_intron Mus_musculus 0 475
ENSMUST00000191215 RP23-125B4.2-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000163059 Prpf3-008 retained_intron Mus_musculus 0 291
ENSMUST00000159901 Prpf3-010 protein_coding Mus_musculus 0 291

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