C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GTF2I repeat domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016086 Gtf2ird2-001 ENSMUSG00000015942 10090 + 5:134184027-134218146 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016086
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016086 3.273±1.80 2.745±0.74 3.801±1.05 6.522±1.72 4.053±0.22 2.370±0.76 1.404±0.36 1.648±0.41 1.343±0.79 3.894±0.21 1.425±0.36 4.374±1.54 1.197±0.65 2.430±1.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051K CIL_00051K_0002 CGP 5:134148054-134224355

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0014883 IDA transition between fast and slow fiber

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000394939 GTF2IRD2B-007 retained_intron Homo_sapiens 0 401
ENST00000418185 GTF2IRD2B-002 nonsense_mediated_decay Homo_sapiens 0 1406
ENST00000424290 GTF2IP2-001 unprocessed_pseudogene Homo_sapiens 1e-20 104
ENST00000449689 GTF2IRD2P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1696
ENST00000451013 GTF2IRD2-001 protein_coding Homo_sapiens 0 1792
ENST00000472837 GTF2IRD2B-001 protein_coding Homo_sapiens 0 1814
ENST00000484624 GTF2IRD2-006 retained_intron Homo_sapiens 2e-18 99
ENST00000610955 GTF2IRD2-008 retained_intron Homo_sapiens 0 401
ENST00000611835 GTF2IRD2B-006 retained_intron Homo_sapiens 0 1496
ENST00000618962 GTF2IRD2P1-003 retained_intron Homo_sapiens 0 1452
ENST00000619142 GTF2IRD2B-004 protein_coding Homo_sapiens 0 809
ENST00000620147 GTF2IRD2P1-002 processed_transcript Homo_sapiens 0 1635

Loading