C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GTF2I repeat domain containing 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418185 GTF2IRD2B-002 ENSG00000174428 9606 + 7:75092612-75149817 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverMuscleOvaryPlacentaENST00000418185
Transcript ID Brain Breast Liver Muscle Ovary Placenta
ENST00000418185 0.129±0.04 0.471±0.00 0.114±0.04 0.361±0.00 0.449±0.05 0.196±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051K CIL_00051K_0001 CGP 7:75027122-75149817

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016086 Gtf2ird2-001 protein_coding Mus_musculus 0 1406
ENSMUST00000128842 Gtf2ird2-003 retained_intron Mus_musculus 0 490
ENSMUST00000123941 Gtf2ird2-002 nonsense_mediated_decay Mus_musculus 0 401

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