C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cullin 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016680 Cul4a-001 ENSMUSG00000031446 10090 + 8:13105621-13147940 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016680
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016680 25.387±1.81 25.354±2.02 22.632±1.46 18.916±7.19 14.847±3.33 13.657±2.34 17.666±1.23 15.840±1.42 24.824±7.34 16.243±0.27 23.205±1.10 31.037±7.02 21.677±6.37 25.379±5.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GG CIL_0005GG_0002 CGP 8:13077189-13147940
CIL_0000QK CIL_0000QK_0002 CGP 8:13105621-13175338

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006281 IEA DNA repair
GO:0006511 IMP ubiquitin-dependent protein catabolic process
GO:0008284 IDA positive regulation of cell proliferation
GO:0016032 IEA viral process
GO:0016567 IEA protein ubiquitination
GO:0030097 IMP hemopoiesis
GO:0030853 IDA negative regulation of granulocyte differentiation
GO:0031464 ISS Cul4A-RING E3 ubiquitin ligase complex
GO:0031625 IEA ubiquitin protein ligase binding
GO:0035019 IMP somatic stem cell maintenance
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045732 ISO positive regulation of protein catabolic process
GO:0051246 IMP regulation of protein metabolic process
GO:0080008 ISS Cul4-RING E3 ubiquitin ligase complex
GO:1900087 IMP positive regulation of G1/S transition of mitotic cell cycle
GO:2000001 IMP regulation of DNA damage checkpoint
GO:2000819 IMP regulation of nucleotide-excision repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000149254 cul4b-001 protein_coding Danio_rerio 0 1199
ENSDART00000085295 cul4b-201 protein_coding Danio_rerio 0 1195
ENST00000326335 CUL4A-201 protein_coding Homo_sapiens 0 2193
ENST00000375440 CUL4A-002 protein_coding Homo_sapiens 0 2507
ENST00000375441 CUL4A-202 protein_coding Homo_sapiens 0 2287
ENST00000451881 CUL4A-203 protein_coding Homo_sapiens 0 2283
ENST00000463426 CUL4A-004 processed_transcript Homo_sapiens 0 444
ENST00000474116 CUL4A-006 processed_transcript Homo_sapiens 0 488
ENST00000488558 CUL4A-007 protein_coding Homo_sapiens 0 669
ENST00000494985 CUL4A-003 processed_transcript Homo_sapiens 0 193
ENST00000498562 CUL4A-005 processed_transcript Homo_sapiens 0 693
ENST00000514750 CUL4AP1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000617546 CUL4A-001 protein_coding Homo_sapiens 0 2152

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