C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016781 Ift27-201 ENSMUSG00000016637 10090 - 15:78159465-78174108 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016781
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016781 15.719±6.41 21.565±3.74 13.204±0.50 14.396±6.36 16.421±7.61 18.016±5.75 7.908±1.21 20.360±6.53 8.461±1.99 14.391±6.87 5.551±1.91 28.502±10.53 6.024±1.35 26.670±11.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006F7 CIL_0006F7_0003 CGP 15:77991748-78174108
CIL_0005SS CIL_0005SS_0002 CGP 15:78159465-78206400

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005813 IDA centrosome
GO:0005929 IDA cilium
GO:0007264 IEA small GTPase mediated signal transduction
GO:0030992 IDA intraciliary transport particle B
GO:0042073 IC intraciliary transport
GO:0097225 IDA sperm midpiece
GO:0097228 IDA sperm principal piece

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340630 IFT27-001 protein_coding Homo_sapiens 0 580
ENST00000415653 IFT27-008 nonsense_mediated_decay Homo_sapiens 0 414
ENST00000417951 IFT27-002 protein_coding Homo_sapiens 0 435
ENST00000430701 IFT27-005 protein_coding Homo_sapiens 0 396
ENST00000433985 IFT27-201 protein_coding Homo_sapiens 0 595
ENST00000440696 IFT27-003 protein_coding Homo_sapiens 0 278
ENST00000465023 IFT27-004 retained_intron Homo_sapiens 1.99993e-41 172
ENST00000471809 IFT27-011 retained_intron Homo_sapiens 0 399

Loading