C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017365 Psmd3-001 ENSMUSG00000017221 10090 + 11:98682554-98695979 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017365
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017365 74.753±17.75 78.602±7.55 52.653±6.29 68.280±17.89 68.857±20.51 65.930±4.69 51.134±9.28 122.448±15.69 66.847±11.71 65.417±1.77 51.100±1.07 96.201±21.38 75.248±25.40 30.191±9.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WH CIL_0007WH_0002 VISTA 11:98091902-98695006
CIL_00098Y CIL_00098Y_0002 VISTA 11:98447152-99051430
CIL_0002PR CIL_0002PR_0002 CGP 11:98664351-98695979
CIL_0002PY CIL_0002PY_0002 CGP 11:98682554-98703629

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005838 IDA proteasome regulatory particle
GO:0016020 IEA membrane
GO:0022624 IDA proteasome accessory complex
GO:0030234 IEA enzyme regulator activity
GO:0042176 IEA regulation of protein catabolic process
GO:0050790 IEA regulation of catalytic activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264639 PSMD3-001 protein_coding Homo_sapiens 0 2303
ENST00000415039 PSMD3-003 nonsense_mediated_decay Homo_sapiens 0 1458
ENST00000540504 PSMD3-005 protein_coding Homo_sapiens 0 383
ENST00000580980 PSMD3-004 retained_intron Homo_sapiens 0 518

Loading