C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002PY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108344-ENSG00000108342 CGP 9606 17:39980797-40017813
GeneTranscriptPositionBiotype
ENSG00000108342 (CSF3)
colony stimulating factor 3 (granulocyte) 		ENST00000225474 (CSF3-001) 40015444-40017813 protein_coding
ENST00000331769 (CSF3-002) 40015447-40017813 protein_coding
ENST00000394148 (CSF3-004) 40015467-40017057 protein_coding
ENST00000394149 (CSF3-003) 40015361-40017813 protein_coding
ENST00000479880 (CSF3-005) 40015447-40016943 retained_intron
ENST00000577675 (CSF3-006) 40015487-40017648 protein_coding
ENST00000579852 (CSF3-007) 40015446-40017758 nonsense_mediated_decay
ENST00000582798 (CSF3-009) 40015435-40016162 retained_intron
ENST00000583218 (CSF3-008) 40015361-40016917 protein_coding
ENSG00000108344 (PSMD3)
proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 		ENST00000264639 (PSMD3-001) 39980797-39997960 protein_coding
ENST00000415039 (PSMD3-003) 39980836-39997611 nonsense_mediated_decay
ENST00000485835 (PSMD3-002) 39992998-39996120 retained_intron
ENST00000540504 (PSMD3-005) 39986609-39997955 protein_coding
ENST00000580980 (PSMD3-004) 39986684-39990152 retained_intron
ENSG00000265799 (RP11-387H17.6)
 ENST00000583462 (RP11-387H17.6-002) 40012226-40014629 lincRNA
ENST00000584649 (RP11-387H17.6-001) 40012544-40014705 lincRNA
CIL_0002PY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000017221-ENSMUSG00000038067 CGP 10090 11:98682554-98703629
GeneTranscriptPositionBiotype
ENSMUSG00000017221 (Psmd3)
proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 		ENSMUST00000017365 (Psmd3-001) 98682554-98695979 protein_coding
ENSMUST00000123676 (Psmd3-004) 98687787-98693840 protein_coding
ENSMUST00000142790 (Psmd3-006) 98690461-98691469 retained_intron
ENSMUST00000149489 (Psmd3-002) 98682565-98692517 retained_intron
ENSMUST00000152102 (Psmd3-005) 98682591-98695049 retained_intron
ENSMUSG00000038067 (Csf3)
colony stimulating factor 3 (granulocyte) 		ENSMUST00000038886 (Csf3-001) 98701263-98703629 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002PY_0001ENSG00000108342ENST00000225474ENST00000331769ENST00000394148ENST00000394149ENST00000479880ENST00000577675ENST00000579852ENST00000582798ENST00000583218ENSG00000108344ENST00000264639ENST00000415039ENST00000485835ENST00000540504ENST00000580980ENSG00000265799ENST00000583462ENST00000584649CIL_0002PY_0002ENSMUSG00000017221ENSMUST00000017365ENSMUST00000123676ENSMUST00000142790ENSMUST00000149489ENSMUST00000152102ENSMUSG00000038067ENSMUST00000038886
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002PY_0001ENSG00000108342ENST00000225474ENST00000331769ENST00000394148ENST00000394149ENST00000479880ENST00000577675ENST00000579852ENST00000582798ENST00000583218ENSG00000108344ENST00000264639ENST00000415039ENST00000485835ENSG00000265799ENST00000583462ENST00000584649CIL_0002PY_0002ENSMUSG00000017221ENSMUST00000017365ENSMUST00000123676ENSMUST00000149489ENSMUSG00000038067ENSMUST00000038886
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108342 ENST00000225474 N/A 0.132±0.00 N/A 0.776±0.00 N/A N/A N/A N/A N/A 54.076±0.00 N/A 0.202±0.14 3.315±0.00 N/A
ENST00000331769 N/A 0.299±0.00 N/A N/A N/A 0.522±0.00 N/A N/A N/A 28.089±0.00 0.197±0.04 N/A N/A 0.450±0.00
ENST00000394148 0.077±0.00 N/A N/A N/A N/A N/A N/A 0.306±0.00 N/A 0.200±0.00 2.740±0.00 0.821±0.00 N/A N/A
ENST00000394149 N/A N/A N/A 0.832±0.76 N/A N/A N/A N/A N/A 19.553±0.00 N/A 0.641±0.00 0.736±0.27 0.151±0.01
ENST00000479880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.869±0.00 N/A N/A N/A
ENST00000577675 N/A 0.156±0.00 N/A N/A N/A N/A N/A N/A 0.544±0.00 0.150±0.00 N/A 0.295±0.00 N/A N/A
ENST00000579852 0.051±0.00 N/A N/A N/A 0.272±0.05 N/A 0.167±0.00 N/A 0.138±0.00 61.831±0.00 N/A 1.994±0.00 0.145±0.04 N/A
ENST00000582798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.00
ENST00000583218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.00 N/A N/A N/A
ENSG00000108344 ENST00000264639 48.526±0.00 49.725±0.00 0.454±0.00 26.642±17.76 25.896±21.34 18.590±12.90 20.442±16.60 22.350±18.51 24.322±20.26 22.417±20.00 89.537±74.55 55.871±28.88 62.906±9.79 49.602±7.61
ENST00000415039 N/A N/A 1.108±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485835 N/A N/A 0.529±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000265799 ENST00000583462 0.123±0.00 0.414±0.00 0.256±0.00 0.097±0.00 0.131±0.00 0.056±0.01 0.171±0.07 N/A 0.159±0.12 0.041±0.00 0.093±0.00 0.104±0.04 N/A 0.442±0.25
ENST00000584649 0.167±0.00 0.440±0.00 0.166±0.00 0.241±0.00 0.059±0.00 0.469±0.00 N/A 0.185±0.00 0.100±0.00 0.043±0.00 0.265±0.00 0.629±0.35 0.115±0.00 0.887±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017221 ENSMUST00000017365 74.753±17.75 78.602±7.55 52.653±6.29 68.280±17.89 68.857±20.51 65.930±4.69 51.134±9.28 122.448±15.69 66.847±11.71 65.417±1.77 51.100±1.07 96.201±21.38 75.248±25.40 30.191±9.80
ENSMUST00000123676 N/A N/A N/A N/A 34.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149489 N/A N/A N/A N/A 3.672±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152102 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038067 ENSMUST00000038886 0.348±0.25 0.161±0.09 0.066±0.00 0.035±0.00 0.582±0.25 0.071±0.01 0.021±0.00 0.019±0.00 0.023±0.01 0.048±0.00 0.054±0.00 3.277±1.27 0.070±0.03 0.185±0.10

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