C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017743 Krt20-001 ENSMUSG00000035775 10090 - 11:99428403-99438150 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017743
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017743 0.242±0.11 0.050±0.00 25.582±4.55 0.033±0.03 0.158±0.08 187.556±69.04 0.023±0.01 0.109±0.06 6.999±5.98 0.651±0.10 0.028±0.01 0.577±0.23 8.231±10.70 0.084±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000U CGP 11:99415666-99438150
CIL_0000TN CIL_0000TN_0007 CGP 11:99428403-99493137

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005882 IEA intermediate filament
GO:0006915 IEA apoptotic process
GO:0033554 IDA cellular response to stress
GO:0045109 IMP intermediate filament organization
GO:0050708 IDA regulation of protein secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000167586 KRT14-001 protein_coding Homo_sapiens 1e-29 135
ENST00000414673 KRT16P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0.0000000000001 82
ENST00000441550 KRT14-002 retained_intron Homo_sapiens 4e-17 94
ENST00000476662 KRT14-003 retained_intron Homo_sapiens 6e-29 132

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