C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000TN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000036840-ENSDARG00000036840 CGP 7955 11:11637154-11764765
GeneTranscriptPositionBiotype
ENSDARG00000019365 (zgc:110712)
zgc:110712 		ENSDART00000136114 (zgc:110712-002) 11687727-11695136 processed_transcript
ENSDART00000142208 (zgc:110712-001) 11687372-11696446 protein_coding
ENSDARG00000036840 (krt15)
keratin 15 		ENSDART00000025016 (krt15-201) 11637240-11764765 protein_coding
ENSDART00000104254 (krt15-001) 11637154-11639845 protein_coding
ENSDARG00000074508 (HAP1)
huntingtin-associated protein 1 		ENSDART00000112328 (HAP1-201) 11718450-11746419 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000TN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000044975-ENSDARG00000044973 CGP 7955 11:11589958-11635361
GeneTranscriptPositionBiotype
ENSDARG00000044973 (KRT23 (2 of 2))
 ENSDART00000104264 (KRT23 (2 of 2)-201) 11625390-11635355 protein_coding
ENSDART00000132291 (KRT23 (2 of 2)-002) 11625439-11635361 protein_coding
ENSDART00000133488 (KRT23 (2 of 2)-003) 11625743-11634183 processed_transcript
ENSDART00000134806 (KRT23 (2 of 2)-001) 11625390-11635361 protein_coding
ENSDART00000137449 (KRT23 (2 of 2)-004) 11625637-11634788 processed_transcript
ENSDART00000140421 (KRT23 (2 of 2)-005) 11625390-11634657 retained_intron
ENSDARG00000044975 (zgc:153629)
zgc:153629 		ENSDART00000030103 (zgc:153629-201) 11589958-11592854 protein_coding

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CIL_0000TN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000092947-ENSDARG00000036830 CGP 7955 19:5986623-6004973
GeneTranscriptPositionBiotype
ENSDARG00000036830 (KRT23 (1 of 2))
 ENSDART00000000221 (KRT23 (1 of 2)-001) 6002766-6004973 protein_coding
ENSDART00000105803 (KRT23 (1 of 2)-201) 5986769-6004894 protein_coding
ENSDART00000146890 (KRT23 (1 of 2)-003) 6003796-6004910 nonsense_mediated_decay
ENSDART00000151644 (KRT23 (1 of 2)-002) 6003705-6004502 retained_intron
ENSDARG00000092947 (cyt1)
type I cytokeratin, enveloping layer 		ENSDART00000004812 (cyt1-001) 5986623-5988852 protein_coding
ENSDART00000105806 (cyt1-201) 5986769-5988783 protein_coding
ENSDART00000133032 (cyt1-004) 5987597-5988842 nonsense_mediated_decay
ENSDART00000138392 (cyt1-002) 5986623-5988842 retained_intron

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CIL_0000TN_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171345-ENSG00000171403 CGP 9606 17:41523617-41572058
GeneTranscriptPositionBiotype
ENSG00000171345 (KRT19)
keratin 19 		ENST00000361566 (KRT19-001) 41523617-41528308 protein_coding
ENST00000455635 (KRT19-002) 41524519-41528299 protein_coding
ENST00000462611 (KRT19-003) 41524978-41525672 retained_intron
ENST00000468880 (KRT19-005) 41523714-41524993 retained_intron
ENST00000471565 (KRT19-006) 41523988-41524751 retained_intron
ENST00000479031 (KRT19-004) 41524493-41525221 retained_intron
ENST00000593096 (KRT19-007) 41523875-41525445 protein_coding
ENSG00000171403 (KRT9)
keratin 9 		ENST00000246662 (KRT9-001) 41565841-41572058 protein_coding
ENST00000588431 (KRT9-002) 41566104-41572053 protein_coding
ENSG00000226629 (LINC00974)
long intergenic non-protein coding RNA 974 		ENST00000456403 (LINC00974-001) 41549606-41554495 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000TN_0005 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171431-ENSG00000108244 CGP 9606 17:40875941-40937634
GeneTranscriptPositionBiotype
ENSG00000108244 (KRT23)
keratin 23 (histone deacetylase inducible) 		ENST00000209718 (KRT23-001) 40922696-40937420 protein_coding
ENST00000436344 (KRT23-005) 40922700-40937450 protein_coding
ENST00000462312 (KRT23-002) 40922700-40937584 nonsense_mediated_decay
ENST00000485751 (KRT23-004) 40936448-40937486 protein_coding
ENST00000494691 (KRT23-003) 40928238-40937545 nonsense_mediated_decay
ENST00000582283 (KRT23-008) 40936742-40937577 processed_transcript
ENST00000582754 (KRT23-006) 40925161-40936835 retained_intron
ENST00000584517 (KRT23-010) 40929676-40936390 protein_coding
ENST00000585006 (KRT23-009) 40936832-40937634 processed_transcript
ENSG00000171431 (KRT20)
keratin 20 		ENST00000167588 (KRT20-001) 40875941-40885227 protein_coding
ENST00000482529 (KRT20-002) 40882463-40884910 retained_intron
ENSG00000234477 (AC004231.2)
 ENST00000418393 (AC004231.2-001) 40921430-40975926 antisense

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CIL_0000TN_0006 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020911-ENSMUSG00000051617 CGP 10090 11:100140810-100193246
GeneTranscriptPositionBiotype
ENSMUSG00000020911 (Krt19)
keratin 19 		ENSMUST00000007317 (Krt19-001) 100140810-100146120 protein_coding
ENSMUST00000125888 (Krt19-003) 100142120-100148665 processed_transcript
ENSMUST00000126460 (Krt19-002) 100140907-100143699 processed_transcript
ENSMUSG00000051617 (Krt9)
keratin 9 		ENSMUST00000059707 (Krt9-001) 100186781-100193246 protein_coding

Mus musculus Ensembl (GRCm38)

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CIL_0000TN_0007 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035775-ENSMUSG00000006777 CGP 10090 11:99428403-99493137
GeneTranscriptPositionBiotype
ENSMUSG00000006777 (Krt23)
keratin 23 		ENSMUST00000006969 (Krt23-001) 99477974-99493137 protein_coding
ENSMUSG00000035775 (Krt20)
keratin 20 		ENSMUST00000017743 (Krt20-001) 99428403-99438150 protein_coding

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TN_0001ENSDARG00000019365ENSDART00000136114ENSDART00000142208ENSDARG00000036840ENSDART00000025016ENSDART00000104254ENSDARG00000074508ENSDART00000112328CIL_0000TN_0002ENSDARG00000044973ENSDART00000104264ENSDART00000132291ENSDART00000133488ENSDART00000134806ENSDART00000137449ENSDART00000140421ENSDARG00000044975ENSDART00000030103CIL_0000TN_0003ENSDARG00000036830ENSDART00000000221ENSDART00000105803ENSDART00000146890ENSDART00000151644ENSDARG00000092947ENSDART00000004812ENSDART00000105806ENSDART00000133032ENSDART00000138392CIL_0000TN_0004ENSG00000171345ENST00000361566ENST00000455635ENST00000462611ENST00000468880ENST00000471565ENST00000479031ENST00000593096ENSG00000171403ENST00000246662ENST00000588431ENSG00000226629ENST00000456403CIL_0000TN_0005ENSG00000108244ENST00000209718ENST00000436344ENST00000462312ENST00000485751ENST00000494691ENST00000582283ENST00000582754ENST00000584517ENST00000585006ENSG00000171431ENST00000167588ENST00000482529ENSG00000234477ENST00000418393CIL_0000TN_0006ENSMUSG00000020911ENSMUST00000007317ENSMUST00000125888ENSMUST00000126460ENSMUSG00000051617ENSMUST00000059707CIL_0000TN_0007ENSMUSG00000006777ENSMUST00000006969ENSMUSG00000035775ENSMUST00000017743
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TN_0001ENSDARG00000019365ENSDART00000136114ENSDART00000142208ENSDARG00000036840ENSDART00000025016ENSDART00000104254ENSDARG00000074508ENSDART00000112328CIL_0000TN_0002ENSDARG00000044973ENSDART00000104264ENSDART00000132291ENSDART00000134806ENSDART00000137449ENSDART00000140421ENSDARG00000044975ENSDART00000030103CIL_0000TN_0003ENSDARG00000036830ENSDART00000000221ENSDARG00000092947ENSDART00000004812CIL_0000TN_0004ENSG00000171345ENST00000361566ENST00000455635ENST00000468880ENST00000593096ENSG00000171403ENST00000246662ENST00000588431ENSG00000226629ENST00000456403CIL_0000TN_0005ENSG00000108244ENST00000209718ENST00000436344ENST00000462312ENST00000494691ENST00000582754ENST00000584517ENST00000585006ENSG00000171431ENST00000167588ENSG00000234477ENST00000418393CIL_0000TN_0006ENSMUSG00000020911ENSMUST00000007317ENSMUST00000125888ENSMUST00000126460ENSMUSG00000051617ENSMUST00000059707CIL_0000TN_0007ENSMUSG00000006777ENSMUST00000006969ENSMUSG00000035775ENSMUST00000017743
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019365 ENSDART00000136114 N/A N/A N/A 0.102±0.02 N/A N/A N/A 0.097±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000142208 N/A N/A N/A 0.051±0.00 N/A N/A 0.079±0.00 0.127±0.00 N/A N/A 0.080±0.00 N/A N/A N/A
ENSDARG00000036840 ENSDART00000025016 N/A N/A N/A 1.545±0.04 N/A N/A 175.335±15.61 12.267±9.79 0.294±0.00 N/A 5.050±0.00 N/A N/A N/A
ENSDART00000104254 N/A N/A N/A 1.150±1.25 N/A N/A 194.961±13.23 30.766±37.93 0.226±0.00 N/A 16.667±0.00 N/A N/A N/A
ENSDARG00000074508 ENSDART00000112328 N/A N/A N/A 21.103±4.28 N/A N/A 9.609±2.58 2.343±0.15 0.083±0.00 N/A 3.007±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000044973 ENSDART00000104264 N/A N/A N/A 0.051±0.00 N/A N/A 0.114±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000132291 N/A N/A N/A 0.115±0.06 N/A N/A 0.452±0.15 0.605±0.08 N/A N/A N/A N/A N/A N/A
ENSDART00000133488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134806 N/A N/A N/A N/A N/A N/A 0.114±0.00 0.487±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000137449 N/A N/A N/A 0.062±0.01 N/A N/A 1.637±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140421 N/A N/A N/A N/A N/A N/A N/A 0.781±0.07 N/A N/A N/A N/A N/A N/A
ENSDARG00000044975 ENSDART00000030103 N/A N/A N/A 13.540±9.13 N/A N/A 314.439±227.84 61.993±42.43 3.193±0.00 N/A 28.112±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036830 ENSDART00000000221 N/A N/A N/A 8.678±13.28 N/A N/A 157.946±73.13 42.354±50.83 1.319±0.00 N/A 71.594±0.00 N/A N/A N/A
ENSDART00000105803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000092947 ENSDART00000004812 N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000105806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000133032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000171345 ENST00000361566 2.806±0.00 0.238±0.00 6.058±0.00 0.349±0.00 67.816±32.58 106.195±78.09 1.050±0.52 60.222±59.96 19.763±18.25 77.539±51.64 3.245±0.00 336.895±268.11 672.871±300.84 12.376±10.89
ENST00000455635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1402.890±0.00 536.043±0.00 3.224±0.00
ENST00000462611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468880 N/A 0.077±0.00 N/A N/A N/A N/A 0.154±0.00 N/A N/A N/A 0.196±0.00 N/A N/A N/A
ENST00000471565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593096 N/A 0.139±0.00 N/A 0.232±0.00 10.901±0.00 7.732±0.00 2.029±0.00 41.565±0.00 12.306±0.00 24.094±16.67 2.536±0.00 147.299±154.48 171.564±0.00 6.056±4.44
ENSG00000171403 ENST00000246662 N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A 0.080±0.01 0.168±0.00 N/A
ENST00000588431 N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A 0.075±0.00 N/A 0.087±0.00 0.054±0.01 0.121±0.01
ENSG00000226629 ENST00000456403 0.046±0.00 N/A N/A N/A 0.025±0.00 0.058±0.05 N/A N/A N/A N/A N/A N/A 0.016±0.00 0.017±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108244 ENST00000209718 0.270±0.00 N/A N/A N/A 6.177±0.00 0.085±0.00 N/A 0.076±0.00 0.066±0.02 3.637±0.00 N/A 6.108±3.41 82.836±5.36 6.830±0.00
ENST00000436344 0.062±0.00 N/A N/A N/A 0.628±0.26 N/A N/A N/A N/A 0.464±0.00 N/A 17.877±25.01 77.829±0.00 15.366±5.03
ENST00000462312 N/A N/A 0.031±0.00 0.041±0.00 N/A N/A 0.009±0.00 0.104±0.00 0.152±0.00 N/A 0.029±0.00 N/A N/A N/A
ENST00000485751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494691 N/A N/A N/A N/A N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A N/A
ENST00000582283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582754 N/A 0.043±0.00 N/A N/A 0.178±0.00 N/A N/A 0.216±0.00 N/A N/A N/A 15.893±0.00 25.606±0.00 N/A
ENST00000584517 N/A N/A N/A 0.078±0.00 N/A 0.095±0.00 N/A N/A N/A 0.514±0.00 N/A N/A N/A N/A
ENST00000585006 N/A N/A N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000171431 ENST00000167588 0.030±0.00 N/A 0.134±0.00 0.106±0.00 22.245±0.00 101.373±88.58 0.027±0.01 0.021±0.00 1.302±0.00 N/A 0.254±0.00 0.122±0.12 0.012±0.00 0.029±0.01
ENST00000482529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234477 ENST00000418393 N/A 0.086±0.00 N/A 0.044±0.00 N/A N/A N/A N/A N/A 0.851±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020911 ENSMUST00000007317 59.220±52.86 1.917±0.62 290.828±73.54 1.101±0.80 265.645±122.19 2094.027±417.78 6.997±4.78 6.954±2.28 1.599±1.17 126.852±25.36 0.205±0.09 155.023±59.72 404.386±194.48 2.229±2.38
ENSMUST00000125888 N/A N/A N/A 0.249±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126460 N/A N/A 131.017±35.42 0.543±0.07 71.303±23.06 1010.140±60.45 1.117±0.00 1.811±0.40 1.290±0.93 25.407±0.00 0.501±0.00 46.452±23.71 315.363±264.90 1.295±0.00
ENSMUSG00000051617 ENSMUST00000059707 0.033±0.02 N/A N/A 2.959±4.15 0.037±0.02 0.029±0.00 0.035±0.00 N/A 0.007±0.00 0.037±0.02 0.039±0.00 0.067±0.02 0.020±0.01 0.016±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006777 ENSMUST00000006969 1.467±1.53 0.323±0.00 1.538±0.10 0.022±0.01 2.076±0.44 3.006±0.94 0.426±0.12 1.721±0.28 1.239±1.12 12.891±2.55 0.116±0.06 0.569±0.22 1.838±1.20 0.219±0.09
ENSMUSG00000035775 ENSMUST00000017743 0.242±0.11 0.050±0.00 25.582±4.55 0.033±0.03 0.158±0.08 187.556±69.04 0.023±0.01 0.109±0.06 6.999±5.98 0.651±0.10 0.028±0.01 0.577±0.23 8.231±10.70 0.084±0.05

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