C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhomboid, veinlet-like 3 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017836 Rhbdl3-001 ENSMUSG00000017692 10090 + 11:80300912-80355955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017836
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017836 3.849±0.54 0.891±0.22 0.641±0.10 6.789±1.43 1.773±0.64 2.589±0.34 3.064±0.25 0.719±0.29 0.042±0.03 1.136±0.43 3.132±0.81 2.257±0.87 0.217±0.19 0.159±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VO CIL_0000VO_0002 CGP 11:80209019-80355955
CIL_0000VP CIL_0000VP_0002 CGP 11:80300912-80378034

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004252 IEA serine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269051 RHBDL3-001 protein_coding Homo_sapiens 0 1633
ENST00000431505 RHBDL3-002 protein_coding Homo_sapiens 0 1033
ENST00000536287 RHBDL3-005 protein_coding Homo_sapiens 0 1247
ENST00000538145 RHBDL3-004 protein_coding Homo_sapiens 0 1500
ENST00000578006 RHBDL3-003 nonsense_mediated_decay Homo_sapiens 0 1253
ENST00000582967 RHBDL3-006 retained_intron Homo_sapiens 0 529
ENST00000583104 C17orf75-011 protein_coding Homo_sapiens 2e-31 139

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