C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 52
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018002 Ift52-001 ENSMUSG00000017858 10090 + 2:163017354-163046141 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018002
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018002 14.066±1.79 20.429±8.18 17.626±2.35 9.446±3.57 12.712±3.42 12.471±1.81 7.192±1.54 18.146±1.74 9.560±2.16 13.213±2.06 5.189±0.55 16.054±5.00 8.409±2.94 15.450±6.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044M CIL_00044M_0002 CGP 2:162987330-163046141
CIL_00044J CIL_00044J_0002 CGP 2:163017354-163084688

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001841 IMP neural tube formation
GO:0001947 IMP heart looping
GO:0005515 IPI protein binding
GO:0005813 IDA centrosome
GO:0005814 IDA centriole
GO:0005929 IDA cilium
GO:0007224 IMP smoothened signaling pathway
GO:0007368 IMP determination of left/right symmetry
GO:0009953 IMP dorsal/ventral pattern formation
GO:0030992 IDA intraciliary transport particle B
GO:0032391 IDA photoreceptor connecting cilium
GO:0036064 ISO ciliary basal body
GO:0042073 IBA intraciliary transport
GO:0042733 IMP embryonic digit morphogenesis
GO:0044292 IDA dendrite terminus
GO:0050680 IMP negative regulation of epithelial cell proliferation
GO:0060271 IMP cilium morphogenesis
GO:0070613 IMP regulation of protein processing
GO:0097542 IDA ciliary tip
GO:0097546 IDA ciliary base

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000066191 ift52-001 protein_coding Danio_rerio 0 446
ENST00000373030 IFT52-001 protein_coding Homo_sapiens 0 1594
ENST00000373039 IFT52-002 protein_coding Homo_sapiens 0 1591
ENST00000467024 IFT52-004 processed_transcript Homo_sapiens 0 497
ENST00000468420 IFT52-003 processed_transcript Homo_sapiens 0 510
ENST00000471199 IFT52-007 processed_transcript Homo_sapiens 0 213
ENST00000476986 IFT52-008 processed_transcript Homo_sapiens 0 206
ENST00000486243 IFT52-009 processed_transcript Homo_sapiens 0 250

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