C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal RNA processing 7 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018184 Rrp7a-001 ENSMUSG00000018040 10090 - 15:83113433-83122801 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018184
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018184 16.632±4.46 8.933±2.52 8.913±2.55 9.232±1.36 8.824±0.89 14.721±1.71 4.977±0.39 10.864±0.35 6.265±2.01 7.582±2.84 6.418±0.65 15.464±4.20 28.588±15.47 12.228±1.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323013 RRP7A-001 protein_coding Homo_sapiens 5e-16 92
ENST00000327678 SERHL2-001 protein_coding Homo_sapiens 0.00000000002 75
ENST00000335879 SERHL2-003 protein_coding Homo_sapiens 0.0000000001 71
ENST00000340239 SERHL2-201 protein_coding Homo_sapiens 0.00000000002 75
ENST00000357802 RRP7B-001 processed_transcript Homo_sapiens 0 654
ENST00000407614 SERHL2-004 protein_coding Homo_sapiens 0.000000000007 75
ENST00000416156 SERHL2-006 nonsense_mediated_decay Homo_sapiens 0.0000000003 71
ENST00000437211 RRP7B-003 processed_transcript Homo_sapiens 0 645
ENST00000458605 RRP7B-002 processed_transcript Homo_sapiens 0 645
ENST00000477564 SERHL2-002 nonsense_mediated_decay Homo_sapiens 0.00000000003 75
ENST00000527167 SERHL2-009 retained_intron Homo_sapiens 0.00000000002 75
ENST00000566851 RRP7B-005 transcribed_unprocessed_pseudogene Homo_sapiens 0 640

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