C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily V, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018651 Trpv2-001 ENSMUSG00000018507 10090 + 11:62574538-62600515 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018651
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018651 3.134±0.12 1.228±0.45 4.372±0.41 3.120±2.65 4.837±1.16 2.010±1.19 0.709±0.18 0.698±0.21 1.333±1.15 4.128±1.92 0.367±0.16 2.037±0.74 14.849±10.89 0.152±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NT CIL_0000NT_0002 CGP 11:62574486-62648523

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005261 ISO cation channel activity
GO:0005262 IDA calcium channel activity
GO:0005622 IDA intracellular
GO:0005737 IEA cytoplasm
GO:0005886 ISO plasma membrane
GO:0009266 ISO response to temperature stimulus
GO:0009408 IEA response to heat
GO:0009986 IDA cell surface
GO:0012505 IEA endomembrane system
GO:0016021 IEA integral component of membrane
GO:0030424 IDA axon
GO:0032584 IDA growth cone membrane
GO:0044295 IDA axonal growth cone
GO:0044297 IDA cell body
GO:0045773 IMP positive regulation of axon extension
GO:0070588 IEA calcium ion transmembrane transport
GO:0090280 IMP positive regulation of calcium ion import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338560 TRPV2-001 protein_coding Homo_sapiens 0 1965
ENST00000455666 TRPV2-006 protein_coding Homo_sapiens 0 739
ENST00000475513 TRPV2-004 retained_intron Homo_sapiens 2e-39 167
ENST00000577277 TRPV2-007 protein_coding Homo_sapiens 0 209
ENST00000583241 TRPV2-008 processed_transcript Homo_sapiens 0 265

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