C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily V, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000338560 TRPV2-001 ENSG00000187688 9606 + 17:16415542-16437003 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338560
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338560 6.764±0.00 12.115±0.00 1.824±0.01 5.097±0.00 7.020±0.00 1.601±1.41 2.274±0.00 1.076±0.00 13.604±11.01 0.309±0.00 8.113±2.76 12.248±6.58 2.467±1.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NT CIL_0000NT_0001 CGP 17:16415542-16492153

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 TAS:IEA ion channel activity
GO:0005261 IDA cation channel activity
GO:0005262 IEA calcium channel activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0007600 TAS sensory perception
GO:0009266 IDA response to temperature stimulus
GO:0009408 IEA response to heat
GO:0009986 IEA cell surface
GO:0012505 IEA endomembrane system
GO:0015075 TAS ion transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0030424 IEA axon
GO:0032584 IEA growth cone membrane
GO:0034220 TAS ion transmembrane transport
GO:0044295 IEA axonal growth cone
GO:0044297 IEA cell body
GO:0045773 IEA positive regulation of axon extension
GO:0055085 TAS transmembrane transport
GO:0070588 TAS calcium ion transmembrane transport
GO:0090280 IEA positive regulation of calcium ion import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018651 Trpv2-001 protein_coding Mus_musculus 0 1965
ENSMUST00000102643 Trpv2-003 protein_coding Mus_musculus 0 1949
ENSMUST00000151195 Trpv2-002 processed_transcript Mus_musculus 0 1016
ENSMUST00000153486 Trpv2-004 processed_transcript Mus_musculus 0 396

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