C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: centromere protein V
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018653 Cenpv-001 ENSMUSG00000018509 10090 - 11:62524946-62539261 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018653
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018653 18.258±2.23 19.422±4.15 13.903±3.77 39.077±28.23 16.192±7.95 21.309±2.98 14.162±3.29 13.839±1.80 16.412±7.59 5.632±0.64 9.260±2.17 26.919±8.50 6.820±2.47 340.138±11.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JP CIL_0006JP_0003 CGP 11:62458460-62539261
CIL_00058V CIL_00058V_0003 CGP 11:62524946-62553213

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 ISS kinetochore
GO:0001667 IEA ameboidal cell migration
GO:0003674 ND molecular_function
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0007067 IEA mitotic nuclear division
GO:0015630 IEA microtubule cytoskeleton
GO:0016846 IEA carbon-sulfur lyase activity
GO:0031508 ISS pericentric heterochromatin assembly
GO:0032467 ISS positive regulation of cytokinesis
GO:0033044 ISS regulation of chromosome organization
GO:0034508 ISS centromere complex assembly
GO:0051233 ISS spindle midzone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299736 CENPV-001 protein_coding Homo_sapiens 0 649
ENST00000476243 CENPV-002 protein_coding Homo_sapiens 0 272
ENST00000582062 CENPV-005 retained_intron Homo_sapiens 7e-37 158
ENST00000584214 CENPV-006 retained_intron Homo_sapiens 0 276

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