C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00058V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000092285-ENSDARG00000002369 CGP 7955 5:43672944-43714907
GeneTranscriptPositionBiotype
ENSDARG00000002369 (UBC)
 ENSDART00000035235 (UBC-001) 43682726-43687072 protein_coding
ENSDART00000123908 (UBC-201) 43685529-43714907 protein_coding
ENSDARG00000092285 (cenpv)
centromere protein V 		ENSDART00000147407 (cenpv-002) 43672944-43678760 protein_coding
ENSDART00000148021 (cenpv-001) 43673220-43678703 protein_coding
ENSDARG00000092423 (si:ch211-202a12.7)
si:ch211-202a12.7 		ENSDART00000135625 (si:ch211-202a12.7-001) 43700834-43701312 protein_coding
ENSDARG00000093313 (ubb)
ubiquitin B 		ENSDART00000097583 (ubb-001) 43710809-43714913 protein_coding
ENSDARG00000093779 (si:ch211-202a12.9)
si:ch211-202a12.9 		ENSDART00000137224 (si:ch211-202a12.9-001) 43689277-43690087 protein_coding
ENSDARG00000094706 (si:ch211-202a12.8)
si:ch211-202a12.8 		ENSDART00000138213 (si:ch211-202a12.8-001) 43695254-43696157 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00058V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166582-ENSG00000170315 CGP 9606 17:16342534-16382745
GeneTranscriptPositionBiotype
ENSG00000170315 (UBB)
ubiquitin B 		ENST00000302182 (UBB-001) 16380799-16382740 protein_coding
ENST00000395837 (UBB-002) 16381341-16382740 protein_coding
ENST00000395839 (UBB-003) 16381290-16382740 protein_coding
ENST00000535788 (UBB-005) 16381091-16382739 protein_coding
ENST00000577640 (UBB-008) 16380931-16382526 protein_coding
ENST00000577958 (UBB-006) 16380798-16382038 protein_coding
ENST00000578649 (UBB-009) 16381095-16382745 processed_transcript
ENST00000578706 (UBB-007) 16381465-16382186 protein_coding
ENST00000614404 (UBB-201) 16381465-16382742 protein_coding
ENSG00000265401 (RP11-138I1.4)
 ENST00000583934 (RP11-138I1.4-001) 16382152-16382669 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00058V_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000018509-ENSMUSG00000019505 CGP 10090 11:62524946-62553213
GeneTranscriptPositionBiotype
ENSMUSG00000018509 (Cenpv)
centromere protein V 		ENSMUST00000018653 (Cenpv-001) 62524946-62539261 protein_coding
ENSMUST00000123181 (Cenpv-006) 62533887-62539003 nonsense_mediated_decay
ENSMUST00000123542 (Cenpv-004) 62525143-62538485 processed_transcript
ENSMUST00000135497 (Cenpv-002) 62524949-62527896 retained_intron
ENSMUST00000138772 (Cenpv-005) 62534118-62539003 processed_transcript
ENSMUST00000156349 (Cenpv-003) 62527493-62538629 processed_transcript
ENSMUSG00000019505 (Ubb)
ubiquitin B 		ENSMUST00000019649 (Ubb-001) 62551171-62553213 protein_coding
ENSMUST00000136938 (Ubb-002) 62551676-62552853 protein_coding
ENSMUSG00000087120 (Gm12279)
predicted gene 12279 		ENSMUST00000142533 (Gm12279-001) 62550047-62551041 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058V_0001ENSDARG00000002369ENSDART00000035235ENSDART00000123908ENSDARG00000092285ENSDART00000147407ENSDART00000148021ENSDARG00000092423ENSDART00000135625ENSDARG00000093313ENSDART00000097583ENSDARG00000093779ENSDART00000137224ENSDARG00000094706ENSDART00000138213CIL_00058V_0002ENSG00000170315ENST00000302182ENST00000395837ENST00000395839ENST00000535788ENST00000577640ENST00000577958ENST00000578649ENST00000578706ENST00000614404ENSG00000265401ENST00000583934CIL_00058V_0003ENSMUSG00000018509ENSMUST00000018653ENSMUST00000123181ENSMUST00000123542ENSMUST00000135497ENSMUST00000138772ENSMUST00000156349ENSMUSG00000019505ENSMUST00000019649ENSMUST00000136938ENSMUSG00000087120ENSMUST00000142533
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058V_0001ENSDARG00000002369ENSDART00000035235ENSDART00000123908ENSDARG00000092285ENSDART00000147407ENSDART00000148021ENSDARG00000092423ENSDART00000135625ENSDARG00000093313ENSDART00000097583ENSDARG00000093779ENSDART00000137224ENSDARG00000094706ENSDART00000138213CIL_00058V_0002ENSG00000170315ENST00000302182ENST00000535788ENST00000577640ENSG00000265401ENST00000583934CIL_00058V_0003ENSMUSG00000018509ENSMUST00000018653ENSMUST00000123542ENSMUST00000135497ENSMUST00000138772ENSMUSG00000019505ENSMUST00000019649ENSMUST00000136938ENSMUSG00000087120ENSMUST00000142533
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002369 ENSDART00000035235 N/A N/A N/A 22.304±18.81 N/A N/A 75.636±51.26 49.601±3.00 22.040±0.00 N/A 362.863±0.00 N/A N/A N/A
ENSDART00000123908 N/A N/A N/A 56.526±5.66 N/A N/A 219.905±21.95 94.965±0.00 54.570±0.00 N/A 802.002±0.00 N/A N/A N/A
ENSDARG00000092285 ENSDART00000147407 N/A N/A N/A 0.368±0.00 N/A N/A 0.620±0.11 1.559±1.29 0.272±0.00 N/A 0.446±0.00 N/A N/A N/A
ENSDART00000148021 N/A N/A N/A 0.823±0.05 N/A N/A 0.508±0.18 1.419±0.00 0.395±0.00 N/A 0.748±0.00 N/A N/A N/A
ENSDARG00000092423 ENSDART00000135625 N/A N/A N/A 1.664±0.28 N/A N/A 3.852±0.00 14.397±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000093313 ENSDART00000097583 N/A N/A N/A N/A N/A N/A 38.774±0.00 120.020±41.43 N/A N/A N/A N/A N/A N/A
ENSDARG00000093779 ENSDART00000137224 N/A N/A N/A 0.710±0.38 N/A N/A 3.541±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000094706 ENSDART00000138213 N/A N/A N/A 0.332±0.18 N/A N/A 0.403±0.16 3.183±1.06 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000170315 ENST00000302182 N/A N/A 9.839±0.00 N/A 11.650±0.00 14.068±0.00 10.269±0.00 43.397±0.00 13.477±0.00 16.628±0.00 31.356±0.00 13.193±0.00 N/A N/A
ENST00000395837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535788 251.802±0.00 399.823±0.00 62.282±0.00 372.492±70.51 198.917±91.60 213.733±126.39 162.380±82.14 338.674±2.33 303.917±190.72 283.032±172.83 236.800±25.25 216.524±73.68 568.582±168.76 488.663±120.57
ENST00000577640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 144.307±20.56 N/A
ENST00000577958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578649 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000265401 ENST00000583934 214.741±0.00 385.803±0.00 87.790±0.00 398.533±80.38 188.912±101.46 215.999±114.78 139.014±63.48 324.331±19.66 236.532±142.72 220.554±126.13 198.322±45.87 307.312±220.35 654.243±187.22 1100.518±423.66
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018509 ENSMUST00000018653 18.258±2.23 19.422±4.15 13.903±3.77 39.077±28.23 16.192±7.95 21.309±2.98 14.162±3.29 13.839±1.80 16.412±7.59 5.632±0.64 9.260±2.17 26.919±8.50 6.820±2.47 340.138±11.23
ENSMUST00000123181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123542 5.755±0.16 12.240±0.20 6.451±0.00 15.111±0.00 7.455±0.55 12.999±2.04 5.009±1.05 5.921±2.07 7.912±0.92 3.030±0.72 N/A 18.927±11.47 4.711±2.41 124.149±20.40
ENSMUST00000135497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.236±0.00 N/A N/A
ENSMUST00000138772 N/A 26.434±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.622±0.00 N/A
ENSMUST00000156349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000019505 ENSMUST00000019649 415.547±24.68 328.996±19.31 707.270±43.44 1303.643±380.83 327.239±92.32 453.801±30.69 250.444±38.01 488.782±68.63 393.301±226.05 456.507±36.40 252.018±17.23 364.883±52.83 459.956±232.67 842.714±393.09
ENSMUST00000136938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 212.319±97.11
ENSMUSG00000087120 ENSMUST00000142533 0.528±0.25 0.327±0.07 0.204±0.05 2.701±0.38 0.783±0.33 0.330±0.00 0.641±0.00 0.620±0.35 0.601±0.34 0.666±0.39 0.813±0.21 1.391±0.63 1.336±1.00 6.712±5.32

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