C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lymphocyte specific 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018963 Lsp1-001 ENSMUSG00000018819 10090 + 7:142460846-142494867 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleOvaryTestisENSMUST00000018963
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000018963 26.887±14.99 2.549±0.29 28.406±4.43 11.410±0.35 2.391±1.00 4.261±2.60 17.880±4.05 5.422±1.66 18.256±0.15 0.271±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0002 VISTA 7:142247512-142849546
CIL_0007RG CIL_0007RG_0002 VISTA 7:142251566-142854813
CIL_00097V CIL_00097V_0002 VISTA 7:142268912-142873912
CIL_0005ML CIL_0005ML_0003 CGP 7:142441808-142494867
CIL_0005NK CIL_0005NK_0003 CGP 7:142460809-142506771

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 TAS actin binding
GO:0004871 IEA signal transducer activity
GO:0005886 IEA plasma membrane
GO:0006915 TAS apoptotic process
GO:0006935 IMP chemotaxis
GO:0006952 IMP defense response
GO:0007010 TAS cytoskeleton organization
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000449530 LSP1P3-001 processed_pseudogene Homo_sapiens 1.4013e-45 185
ENST00000599825 RP11-458I4.1-001 processed_pseudogene Homo_sapiens 9e-25 115

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