C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, gamma subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019290 Cacng2-001 ENSMUSG00000019146 10090 - 15:77991748-78120028 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019290
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019290 0.121±0.04 0.003±0.00 6.571±4.86 0.011±0.00 0.008±0.00 0.010±0.00 0.007±0.01 0.012±0.00 0.007±0.00 0.011±0.01 0.003±0.00 0.030±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SO CIL_0005SO_0002 CGP 15:77958998-78120028
CIL_0006F7 CIL_0006F7_0003 CGP 15:77991748-78174108

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IMP voltage-gated calcium channel activity
GO:0005515 IEA protein binding
GO:0005891 IEA voltage-gated calcium channel complex
GO:0007528 IMP neuromuscular junction development
GO:0019226 IGI transmission of nerve impulse
GO:0032281 ISS alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0035255 IEA ionotropic glutamate receptor binding
GO:0042391 IMP regulation of membrane potential
GO:0050877 IMP neurological system process
GO:0051899 IMP membrane depolarization
GO:0060081 IMP membrane hyperpolarization
GO:0070588 IEA calcium ion transmembrane transport
GO:2000311 ISS regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000013939 cacng2b-201 protein_coding Danio_rerio 0 510
ENSDART00000155602 cacng8b-201 protein_coding Danio_rerio 8e-16 92
ENSDART00000103894 cacng8b-001 protein_coding Danio_rerio 8e-16 92
ENST00000300105 CACNG2-001 protein_coding Homo_sapiens 0 1866

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