C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019443 Rnf31-001 ENSMUSG00000047098 10090 + 14:55591708-55603693 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019443
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019443 7.032±0.99 9.455±2.83 7.977±0.19 5.967±1.17 12.821±2.65 8.445±2.37 4.322±1.16 4.784±0.79 4.690±1.79 10.484±0.87 3.496±0.36 7.183±1.79 10.372±4.79 0.924±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031B CIL_00031B_0002 CGP 14:55587441-55603693
CIL_00023F CIL_00023F_0002 CGP 14:55591708-55610030

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 ISS protein polyubiquitination
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0008270 IEA zinc ion binding
GO:0009898 IDA cytoplasmic side of plasma membrane
GO:0016567 IMP protein ubiquitination
GO:0016874 IEA ligase activity
GO:0023035 IMP CD40 signaling pathway
GO:0035631 IDA CD40 receptor complex
GO:0043123 ISS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 ISS ubiquitin binding
GO:0050852 ISS T cell receptor signaling pathway
GO:0051092 ISS positive regulation of NF-kappaB transcription factor activity
GO:0060546 IGI negative regulation of necroptotic process
GO:0071797 ISS LUBAC complex
GO:0097039 ISS protein linear polyubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324103 RNF31-001 protein_coding Homo_sapiens 0 3518
ENST00000483895 RNF31-003 nonsense_mediated_decay Homo_sapiens 0 536
ENST00000491351 RNF31-002 nonsense_mediated_decay Homo_sapiens 0 1496
ENST00000557878 RNF31-009 processed_transcript Homo_sapiens 0 459
ENST00000557991 RNF31-011 protein_coding Homo_sapiens 0 588
ENST00000558452 RNF31-020 retained_intron Homo_sapiens 0 398
ENST00000558468 IRF9-001 nonsense_mediated_decay Homo_sapiens 0 2045
ENST00000558634 RNF31-008 processed_transcript Homo_sapiens 0 477
ENST00000558907 RNF31-018 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000559071 RNF31-006 retained_intron Homo_sapiens 0 2095
ENST00000559260 RNF31-015 protein_coding Homo_sapiens 0 477
ENST00000559275 RNF31-004 protein_coding Homo_sapiens 0 2924
ENST00000559308 RNF31-026 protein_coding Homo_sapiens 0 547
ENST00000559438 RNF31-013 processed_transcript Homo_sapiens 0 459
ENST00000559449 RNF31-022 nonsense_mediated_decay Homo_sapiens 0 824
ENST00000559533 RNF31-010 protein_coding Homo_sapiens 0 743
ENST00000559583 RNF31-017 processed_transcript Homo_sapiens 0 403
ENST00000559719 RNF31-021 protein_coding Homo_sapiens 0 462
ENST00000559882 RNF31-025 processed_transcript Homo_sapiens 0 368
ENST00000560071 RNF31-014 protein_coding Homo_sapiens 0 560
ENST00000560342 RNF31-016 retained_intron Homo_sapiens 0 675
ENST00000560754 RNF31-019 protein_coding Homo_sapiens 0 542
ENST00000560787 RNF31-005 protein_coding Homo_sapiens 0 1910
ENST00000560875 RNF31-007 protein_coding Homo_sapiens 0 219

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