C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019992 Lama4-001 ENSMUSG00000019846 10090 + 10:38965515-39110188 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019992
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019992 31.136±3.78 12.913±1.23 29.382±0.88 4.343±1.86 22.599±2.18 7.965±0.68 11.519±0.57 2.710±0.21 0.499±0.24 17.702±1.24 2.281±0.38 17.660±4.11 9.608±3.98 0.589±0.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0005102 IEA receptor binding
GO:0005576 TAS extracellular region
GO:0005604 IDA basement membrane
GO:0005605 IDA basal lamina
GO:0005606 IEA laminin-1 complex
GO:0007155 IEA cell adhesion
GO:0030155 IEA regulation of cell adhesion
GO:0030334 IEA regulation of cell migration
GO:0045995 IEA regulation of embryonic development
GO:0050873 IDA brown fat cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230538 LAMA4-001 protein_coding Homo_sapiens 0 5696
ENST00000389463 LAMA4-009 protein_coding Homo_sapiens 0 5794
ENST00000423735 LAMA4-004 processed_transcript Homo_sapiens 0 366
ENST00000424408 LAMA4-012 protein_coding Homo_sapiens 0 5794
ENST00000519245 LAMA4-020 retained_intron Homo_sapiens 0 385
ENST00000521398 LAMA4-011 protein_coding Homo_sapiens 0 1059
ENST00000521732 LAMA4-007 protein_coding Homo_sapiens 0 603
ENST00000522006 LAMA4-008 protein_coding Homo_sapiens 0 5794
ENST00000523765 LAMA4-019 nonsense_mediated_decay Homo_sapiens 0 568
ENST00000524032 LAMA4-017 processed_transcript Homo_sapiens 0 592

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