C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-minded homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020071 Sim1-201 ENSMUSG00000019913 10090 + 10:50895651-50989152 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020071
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020071 0.006±0.00 0.307±0.19 0.061±0.03 0.015±0.00 1.470±0.25 0.002±0.00 0.080±0.00 0.074±0.04 0.053±0.04 0.008±0.01 0.035±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V6 CIL_0008V6_0002 VISTA 10:50533719-51134473
CIL_00097X CIL_00097X_0002 VISTA 10:50601664-51202602
CIL_0007NG CIL_0007NG_0002 UCNEbase 10:50743535-51257731

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001657 IEP ureteric bud development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007399 IEA nervous system development
GO:0030154 IEA cell differentiation
GO:0046982 IPI protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000023483 sim1b-001 protein_coding Danio_rerio 0 582
ENSDART00000141639 sim1b-002 nonsense_mediated_decay Danio_rerio 0 342
ENST00000262901 SIM1-201 protein_coding Homo_sapiens 0 3072
ENST00000369208 SIM1-001 protein_coding Homo_sapiens 0 3072
ENST00000511871 SIM1-002 retained_intron Homo_sapiens 0 351

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