C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: helicase (DNA) B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020449 Helb-001 ENSMUSG00000020228 10090 - 10:120083608-120112987 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020449
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020449 1.580±0.26 0.517±0.16 2.676±0.19 1.126±0.20 1.459±0.54 2.589±0.41 1.801±0.24 1.980±0.65 3.446±2.36 1.030±0.17 1.198±0.24 2.080±1.09 1.199±0.21 0.284±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WI CIL_0006WI_0002 CGP 10:120083608-120202130

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004003 IDA ATP-dependent DNA helicase activity
GO:0005524 IEA ATP binding
GO:0005658 IEA alpha DNA polymerase:primase complex
GO:0006260 IEA DNA replication
GO:0006261 IDA DNA-dependent DNA replication
GO:0006269 TAS DNA replication, synthesis of RNA primer
GO:0017116 IEA single-stranded DNA-dependent ATP-dependent DNA helicase activity
GO:0032508 IEA DNA duplex unwinding
GO:0043141 IEA ATP-dependent 5'-3' DNA helicase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000247815 HELB-001 protein_coding Homo_sapiens 0 797
ENST00000440906 HELB-003 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000542394 HELB-002 nonsense_mediated_decay Homo_sapiens 0 797
ENST00000545134 HELB-004 nonsense_mediated_decay Homo_sapiens 0 797
ENST00000545455 HELB-005 retained_intron Homo_sapiens 0 193

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