C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006WI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000053127-ENSDARG00000053131 CGP 7955 4:11834475-11855495
GeneTranscriptPositionBiotype
ENSDARG00000053127 (helb)
helicase (DNA) B 		ENSDART00000058020 (helb-001) 11834475-11845706 protein_coding
ENSDART00000135407 (helb-002) 11842233-11845659 processed_transcript
ENSDARG00000053131 (irak3)
interleukin-1 receptor-associated kinase 3 		ENSDART00000067131 (irak3-001) 11846658-11855495 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006WI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020228-ENSMUSG00000020227 CGP 10090 10:120083608-120202130
GeneTranscriptPositionBiotype
ENSMUSG00000020225 (Tmbim4)
transmembrane BAX inhibitor motif containing 4 		ENSMUST00000020446 (Tmbim4-001) 120208750-120224917 protein_coding
ENSMUST00000123802 (Tmbim4-009) 120221821-120224917 retained_intron
ENSMUST00000134203 (Tmbim4-008) 120220688-120224739 retained_intron
ENSMUST00000134797 (Tmbim4-003) 120208780-120217717 protein_coding
ENSMUST00000135794 (Tmbim4-007) 120202651-120203208 processed_transcript
ENSMUST00000141206 (Tmbim4-002) 120208793-120224839 nonsense_mediated_decay
ENSMUST00000145015 (Tmbim4-005) 120201612-120203208 processed_transcript
ENSMUST00000148678 (Tmbim4-010) 120221821-120224272 retained_intron
ENSMUST00000156247 (Tmbim4-006) 120201590-120203215 processed_transcript
ENSMUST00000156877 (Tmbim4-004) 120201658-120217562 protein_coding
ENSMUSG00000020227 (Irak3)
interleukin-1 receptor-associated kinase 3 		ENSMUST00000020448 (Irak3-001) 120141648-120201659 protein_coding
ENSMUST00000135106 (Irak3-004) 120142163-120201498 nonsense_mediated_decay
ENSMUST00000140237 (Irak3-005) 120160142-120170378 processed_transcript
ENSMUST00000143100 (Irak3-003) 120164976-120201587 retained_intron
ENSMUST00000145665 (Irak3-002) 120141665-120202130 protein_coding
ENSMUSG00000020228 (Helb)
helicase (DNA) B 		ENSMUST00000020449 (Helb-001) 120083608-120112987 protein_coding
ENSMUST00000148241 (Helb-003) 120084708-120092209 retained_intron
ENSMUST00000154501 (Helb-002) 120084770-120112865 nonsense_mediated_decay
ENSMUSG00000034813 (Grip1)
glutamate receptor interacting protein 1 		ENSMUST00000041962 (Grip1-003) 119454320-120077139 protein_coding
ENSMUST00000077871 (Grip1-002) 119454314-120075597 protein_coding
ENSMUST00000081260 (Grip1-016) 119993106-120087260 nonsense_mediated_decay
ENSMUST00000105261 (Grip1-014) 119992922-120077011 protein_coding
ENSMUST00000105262 (Grip1-004) 119819389-120077139 protein_coding
ENSMUST00000127787 (Grip1-012) 119909947-120075517 processed_transcript
ENSMUST00000130387 (Grip1-013) 119992720-120087261 protein_coding
ENSMUST00000138410 (Grip1-005) 119819512-120075597 protein_coding
ENSMUST00000139352 (Grip1-011) 119850739-120077134 retained_intron
ENSMUST00000144825 (Grip1-006) 119819512-120075597 protein_coding
ENSMUST00000144959 (Grip1-010) 119819525-120087060 protein_coding
ENSMUST00000147356 (Grip1-001) 119454034-120087260 protein_coding
ENSMUST00000147454 (Grip1-008) 119819398-120076516 protein_coding
ENSMUST00000147598 (Grip1-007) 119819505-120010737 retained_intron
ENSMUST00000148954 (Grip1-009) 119819515-120075517 protein_coding
ENSMUST00000154238 (Grip1-015) 119993070-120075793 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006WI_0001ENSDARG00000053127ENSDART00000058020ENSDART00000135407ENSDARG00000053131ENSDART00000067131CIL_0006WI_0002ENSMUSG00000020225ENSMUST00000020446ENSMUST00000123802ENSMUST00000134203ENSMUST00000134797ENSMUST00000135794ENSMUST00000141206ENSMUST00000145015ENSMUST00000148678ENSMUST00000156247ENSMUST00000156877ENSMUSG00000020227ENSMUST00000020448ENSMUST00000135106ENSMUST00000140237ENSMUST00000143100ENSMUST00000145665ENSMUSG00000020228ENSMUST00000020449ENSMUST00000148241ENSMUST00000154501ENSMUSG00000034813ENSMUST00000041962ENSMUST00000077871ENSMUST00000081260ENSMUST00000105261ENSMUST00000105262ENSMUST00000127787ENSMUST00000130387ENSMUST00000138410ENSMUST00000139352ENSMUST00000144825ENSMUST00000144959ENSMUST00000147356ENSMUST00000147454ENSMUST00000147598ENSMUST00000148954ENSMUST00000154238
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006WI_0001ENSDARG00000053127ENSDART00000058020ENSDART00000135407ENSDARG00000053131ENSDART00000067131CIL_0006WI_0002ENSMUSG00000020225ENSMUST00000020446ENSMUST00000134797ENSMUST00000141206ENSMUSG00000020227ENSMUST00000020448ENSMUST00000145665ENSMUSG00000020228ENSMUST00000020449ENSMUST00000148241ENSMUST00000154501ENSMUSG00000034813ENSMUST00000041962ENSMUST00000077871ENSMUST00000081260ENSMUST00000105261ENSMUST00000105262ENSMUST00000127787ENSMUST00000130387ENSMUST00000138410ENSMUST00000139352ENSMUST00000144825ENSMUST00000144959ENSMUST00000147356ENSMUST00000147454ENSMUST00000147598ENSMUST00000154238
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000053127 ENSDART00000058020 N/A N/A N/A 0.814±0.29 N/A N/A 1.415±0.38 3.620±1.79 0.027±0.00 N/A 0.752±0.00 N/A N/A N/A
ENSDART00000135407 N/A N/A N/A 1.389±0.00 N/A N/A N/A N/A 0.189±0.00 N/A N/A N/A N/A N/A
ENSDARG00000053131 ENSDART00000067131 N/A N/A N/A 0.858±0.35 N/A N/A 3.228±1.07 4.063±1.04 0.720±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020225 ENSMUST00000020446 53.741±6.53 40.897±10.97 52.005±3.09 17.984±4.41 57.784±11.97 72.253±22.63 55.162±5.54 278.008±23.59 55.620±23.72 53.254±1.97 38.994±4.71 52.127±12.86 51.683±19.09 103.305±43.22
ENSMUST00000123802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134797 33.620±10.70 174.274±46.50 N/A 10.892±0.00 64.464±14.57 154.382±27.20 25.714±0.50 177.292±71.74 49.487±20.88 50.669±25.72 N/A 66.440±24.09 11.288±0.00 69.639±0.00
ENSMUST00000135794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141206 N/A 85.289±11.15 N/A N/A N/A 32.297±0.00 N/A N/A 45.969±2.78 N/A N/A 34.364±0.00 N/A N/A
ENSMUST00000145015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020227 ENSMUST00000020448 4.569±0.96 N/A 2.920±0.15 N/A 5.541±0.69 N/A N/A N/A 2.081±0.00 3.040±0.41 0.838±0.07 N/A N/A N/A
ENSMUST00000135106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145665 N/A N/A N/A N/A 9.325±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 11.522±1.99
ENSMUSG00000020228 ENSMUST00000020449 1.580±0.26 0.517±0.16 2.676±0.19 1.126±0.20 1.459±0.54 2.589±0.41 1.801±0.24 1.980±0.65 3.446±2.36 1.030±0.17 1.198±0.24 2.080±1.09 1.199±0.21 0.284±0.07
ENSMUST00000148241 1.014±0.00 2.620±0.39 1.484±0.26 0.987±0.24 2.571±0.58 3.735±0.37 0.961±0.00 1.303±0.27 2.214±1.78 1.979±0.34 0.619±0.00 2.167±0.68 N/A 0.398±0.00
ENSMUST00000154501 N/A 0.574±0.00 N/A 0.504±0.00 N/A N/A N/A N/A N/A N/A 0.223±0.00 1.098±0.52 N/A 0.171±0.00
ENSMUSG00000034813 ENSMUST00000041962 N/A 0.038±0.00 N/A 1.943±0.14 N/A 0.191±0.00 N/A N/A 0.343±0.09 0.125±0.01 0.007±0.00 0.118±0.03 0.225±0.05 N/A
ENSMUST00000077871 N/A N/A N/A 3.381±0.00 N/A N/A N/A N/A N/A N/A N/A 0.235±0.12 N/A N/A
ENSMUST00000081260 0.013±0.00 0.037±0.00 N/A N/A 0.082±0.00 N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.077±0.00 35.878±7.63
ENSMUST00000105261 N/A N/A 0.031±0.00 2.342±0.00 N/A N/A N/A N/A 0.027±0.01 N/A 0.012±0.00 0.198±0.02 N/A 7.508±1.17
ENSMUST00000105262 N/A N/A N/A 5.519±0.18 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127787 N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.521±0.58
ENSMUST00000138410 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.177±0.00 N/A N/A 0.114±0.00 N/A
ENSMUST00000139352 N/A 0.024±0.00 0.036±0.02 N/A N/A 0.079±0.04 0.031±0.01 0.161±0.01 0.125±0.01 N/A N/A 0.147±0.04 0.139±0.01 N/A
ENSMUST00000144825 N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144959 N/A N/A N/A N/A N/A N/A 0.115±0.00 0.687±0.19 N/A 0.374±0.00 0.007±0.00 0.190±0.00 N/A N/A
ENSMUST00000147356 0.133±0.11 0.046±0.02 0.053±0.01 3.058±1.09 0.088±0.08 0.151±0.07 0.037±0.01 0.486±0.20 0.201±0.04 0.248±0.06 N/A 0.327±0.14 0.268±0.12 N/A
ENSMUST00000147454 0.266±0.00 N/A 0.034±0.01 N/A 0.038±0.00 N/A 0.055±0.02 0.347±0.09 0.221±0.06 0.091±0.00 N/A N/A 0.260±0.04 N/A
ENSMUST00000147598 N/A 0.080±0.01 N/A N/A N/A 0.533±0.00 N/A N/A N/A N/A N/A 0.268±0.06 N/A N/A
ENSMUST00000148954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154238 N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A 0.262±0.00 N/A N/A

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