C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aldehyde dehydrogenase 1 family, member L2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020497 Aldh1l2-001 ENSMUSG00000020256 10090 - 10:83487450-83534140 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000020497
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000020497 0.940±0.65 0.240±0.10 1.043±0.05 7.186±0.95 0.424±0.15 0.521±0.16 1.396±0.28 0.423±0.20 0.320±0.55 0.315±0.05 0.801±0.08 0.544±0.19 0.394±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RN CIL_0005RN_0002 CGP 10:83360221-83534140
CIL_0004GA CIL_0004GA_0002 CGP 10:83487450-83596469

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0006730 IEA one-carbon metabolic process
GO:0008168 IEA methyltransferase activity
GO:0009058 IEA biosynthetic process
GO:0009258 IEA 10-formyltetrahydrofolate catabolic process
GO:0016155 IEA formyltetrahydrofolate dehydrogenase activity
GO:0016620 IEA oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0016742 IEA hydroxymethyl-, formyl- and related transferase activity
GO:0032259 IEA methylation
GO:0055114 IEA oxidation-reduction process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258494 ALDH1L2-001 protein_coding Homo_sapiens 0 3018
ENST00000549335 ALDH1L2-003 retained_intron Homo_sapiens 0 1356
ENST00000552270 ALDH1L2-002 nonsense_mediated_decay Homo_sapiens 0 2427
ENST00000552427 ALDH1L2-004 retained_intron Homo_sapiens 0 470

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