C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 22 (organic cation transporter), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020586 Slc22a4-001 ENSMUSG00000020334 10090 - 11:53983123-54028090 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020586
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020586 7.078±2.64 4.644±0.58 0.993±0.29 0.705±0.24 5.999±2.13 0.463±0.11 1.072±0.55 23.131±2.84 8.960±8.71 0.821±0.29 0.667±0.28 1.020±0.42 8.719±8.08 0.622±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RF CIL_0007RF_0002 VISTA 11:53756663-54359415
CIL_00093D CIL_00093D_0002 VISTA 11:53760072-54361368
CIL_0000HR CIL_0000HR_0004 CGP 11:53949965-54028090

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006641 IGI triglyceride metabolic process
GO:0006814 IEA sodium ion transport
GO:0009437 IGI carnitine metabolic process
GO:0015226 IDA carnitine transmembrane transporter activity
GO:0015293 IEA symporter activity
GO:0015491 IEA cation:cation antiporter activity
GO:0015651 IEA quaternary ammonium group transmembrane transporter activity
GO:0015697 IDA quaternary ammonium group transport
GO:0015879 IDA carnitine transport
GO:0016021 IEA integral component of membrane
GO:0016324 IEA apical plasma membrane
GO:0030165 IEA PDZ domain binding
GO:0098655 IEA cation transmembrane transport
GO:1902603 IDA carnitine transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000200652 SLC22A4-001 protein_coding Homo_sapiens 0 1842
ENST00000245407 SLC22A5-001 protein_coding Homo_sapiens 0 798
ENST00000435065 SLC22A5-201 protein_coding Homo_sapiens 0 405
ENST00000437841 SLC22A5-008 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000491257 SLC22A4-003 processed_transcript Homo_sapiens 0 357

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