C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000HR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000005335-ENSDARG00000094112 CGP 7955 21:44228126-44244536
GeneTranscriptPositionBiotype
ENSDARG00000005335 (slc22a4)
solute carrier family 22 (organic cation/ergothioneine transporter), member 4 		ENSDART00000024342 (slc22a4-001) 44228126-44233848 protein_coding
ENSDART00000138828 (slc22a4-003) 44228385-44230008 retained_intron
ENSDART00000145081 (slc22a4-002) 44228321-44230105 retained_intron
ENSDARG00000094112 (slc22a21)
solute carrier family 22 (organic cation transporter), member 21 		ENSDART00000135034 (slc22a21-001) 44235268-44244536 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000HR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197208-ENSG00000197375 CGP 9606 5:132294443-132395614
GeneTranscriptPositionBiotype
ENSG00000072682 (P4HA2)
prolyl 4-hydroxylase, alpha polypeptide II 		ENST00000166534 (P4HA2-003) 132192610-132227857 protein_coding
ENST00000360568 (P4HA2-002) 132192610-132228082 protein_coding
ENST00000379086 (P4HA2-004) 132192610-132227819 protein_coding
ENST00000379100 (P4HA2-201) 132192613-132227242 protein_coding
ENST00000379104 (P4HA2-202) 132192613-132227242 protein_coding
ENST00000395164 (P4HA2-017) 132210490-132222091 protein_coding
ENST00000401867 (P4HA2-001) 132191838-132227815 protein_coding
ENST00000416053 (P4HA2-011) 132217223-132277600 protein_coding
ENST00000417528 (P4HA2-010) 132210380-132227794 protein_coding
ENST00000418055 (P4HA2-016) 132214041-132227835 protein_coding
ENST00000428369 (P4HA2-009) 132213945-132227378 protein_coding
ENST00000428841 (P4HA2-018) 132217779-132228258 protein_coding
ENST00000431054 (P4HA2-014) 132210381-132295271 protein_coding
ENST00000439698 (P4HA2-015) 132210441-132277855 protein_coding
ENST00000453286 (P4HA2-005) 132213924-132227839 protein_coding
ENST00000467587 (P4HA2-008) 132193041-132195730 retained_intron
ENST00000471826 (P4HA2-013) 132248907-132295315 processed_transcript
ENST00000474628 (P4HA2-007) 132192671-132195258 retained_intron
ENST00000478055 (P4HA2-006) 132217197-132227262 retained_intron
ENST00000481636 (P4HA2-012) 132277209-132277922 processed_transcript
ENST00000506807 (P4HA2-019) 132192986-132193568 processed_transcript
ENSG00000197208 (SLC22A4)
solute carrier family 22 (organic cation/zwitterion transporter), member 4 		ENST00000200652 (SLC22A4-001) 132294443-132344206 protein_coding
ENST00000425923 (SLC22A4-002) 132322184-132327385 processed_transcript
ENST00000491257 (SLC22A4-003) 132295425-132320972 processed_transcript
ENSG00000197375 (SLC22A5)
solute carrier family 22 (organic cation/carnitine transporter), member 5 		ENST00000245407 (SLC22A5-001) 132369752-132395614 protein_coding
ENST00000415928 (SLC22A5-004) 132370276-132387151 protein_coding
ENST00000435065 (SLC22A5-201) 132369973-132394272 protein_coding
ENST00000437841 (SLC22A5-008) 132369900-132389005 nonsense_mediated_decay
ENST00000447841 (SLC22A5-005) 132388911-132394752 nonsense_mediated_decay
ENST00000448810 (SLC22A5-002) 132385328-132393815 nonsense_mediated_decay
ENST00000461013 (SLC22A5-006) 132376086-132395611 retained_intron
ENST00000475308 (SLC22A5-003) 132388960-132395613 retained_intron
ENST00000479605 (SLC22A5-007) 132387813-132393683 processed_transcript
ENSG00000233006 (AC034220.3)
 ENST00000453876 (AC034220.3-004) 132349433-132352550 retained_intron
ENST00000457998 (AC034220.3-005) 132366281-132369648 antisense
ENST00000616965 (AC034220.3-002) 132332189-132360136 antisense
ENST00000621103 (AC034220.3-001) 132311285-132369916 antisense
ENSG00000263597 (MIR3936)
microRNA 3936 		ENST00000584304 (MIR3936-201) 132365490-132365599 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000HR_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000018900-ENSMUSG00000063652 CGP 10090 11:53864542-53980332
GeneTranscriptPositionBiotype
ENSMUSG00000018900 (Slc22a5)
solute carrier family 22 (organic cation transporter), member 5 		ENSMUST00000019044 (Slc22a5-001) 53864542-53891660 protein_coding
ENSMUST00000136307 (Slc22a5-002) 53873679-53891595 nonsense_mediated_decay
ENSMUST00000152084 (Slc22a5-003) 53865465-53871677 nonsense_mediated_decay
ENSMUSG00000063652 (Slc22a21)
solute carrier family 22 (organic cation transporter), member 21 		ENSMUST00000076493 (Slc22a21-001) 53949965-53980332 protein_coding
ENSMUST00000124221 (Slc22a21-003) 53957974-53979870 nonsense_mediated_decay
ENSMUST00000129301 (Slc22a21-002) 53950563-53953146 processed_transcript
ENSMUST00000143352 (Slc22a21-004) 53958066-53969603 nonsense_mediated_decay
ENSMUSG00000080768 (Gm12219)
predicted gene 12219 		ENSMUST00000119198 (Gm12219-001) 53967063-53967505 processed_pseudogene
ENSMUSG00000081098 (Gm12220)
predicted gene 12220 		ENSMUST00000118476 (Gm12220-001) 53929305-53929476 unprocessed_pseudogene
ENSMUSG00000082271 (Gm12217)
predicted gene 12217 		ENSMUST00000118858 (Gm12217-001) 53902190-53903568 processed_pseudogene
ENSMUSG00000082380 (Gm12218)
predicted gene 12218 		ENSMUST00000117666 (Gm12218-001) 53902757-53903155 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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CIL_0000HR_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063652-ENSMUSG00000020334 CGP 10090 11:53949965-54028090
GeneTranscriptPositionBiotype
ENSMUSG00000020334 (Slc22a4)
solute carrier family 22 (organic cation transporter), member 4 		ENSMUST00000020586 (Slc22a4-001) 53983123-54028090 protein_coding
ENSMUST00000146351 (Slc22a4-002) 53992059-54007964 processed_transcript
ENSMUST00000154369 (Slc22a4-003) 54014260-54027952 processed_transcript
ENSMUSG00000063652 (Slc22a21)
solute carrier family 22 (organic cation transporter), member 21 		ENSMUST00000076493 (Slc22a21-001) 53949965-53980332 protein_coding
ENSMUST00000124221 (Slc22a21-003) 53957974-53979870 nonsense_mediated_decay
ENSMUST00000129301 (Slc22a21-002) 53950563-53953146 processed_transcript
ENSMUST00000143352 (Slc22a21-004) 53958066-53969603 nonsense_mediated_decay
ENSMUSG00000080768 (Gm12219)
predicted gene 12219 		ENSMUST00000119198 (Gm12219-001) 53967063-53967505 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000HR_0001ENSDARG00000005335ENSDART00000024342ENSDART00000138828ENSDART00000145081ENSDARG00000094112ENSDART00000135034CIL_0000HR_0002ENSG00000072682ENST00000166534ENST00000360568ENST00000379086ENST00000379100ENST00000379104ENST00000395164ENST00000401867ENST00000416053ENST00000417528ENST00000418055ENST00000428369ENST00000428841ENST00000431054ENST00000439698ENST00000453286ENST00000467587ENST00000471826ENST00000474628ENST00000478055ENST00000481636ENST00000506807ENSG00000197208ENST00000200652ENST00000425923ENST00000491257ENSG00000197375ENST00000245407ENST00000415928ENST00000435065ENST00000437841ENST00000447841ENST00000448810ENST00000461013ENST00000475308ENST00000479605ENSG00000233006ENST00000453876ENST00000457998ENST00000616965ENST00000621103ENSG00000263597ENST00000584304CIL_0000HR_0003ENSMUSG00000018900ENSMUST00000019044ENSMUST00000136307ENSMUST00000152084ENSMUSG00000063652ENSMUST00000076493ENSMUST00000124221ENSMUST00000129301ENSMUST00000143352ENSMUSG00000080768ENSMUST00000119198ENSMUSG00000081098ENSMUST00000118476ENSMUSG00000082271ENSMUST00000118858ENSMUSG00000082380ENSMUST00000117666CIL_0000HR_0004ENSMUSG00000020334ENSMUST00000020586ENSMUST00000146351ENSMUST00000154369ENSMUSG00000063652ENSMUST00000076493ENSMUST00000124221ENSMUST00000129301ENSMUST00000143352ENSMUSG00000080768ENSMUST00000119198
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000HR_0001ENSDARG00000005335ENSDART00000024342ENSDART00000145081ENSDARG00000094112ENSDART00000135034CIL_0000HR_0002ENSG00000072682ENST00000166534ENST00000360568ENST00000379086ENST00000379100ENST00000401867ENST00000474628ENSG00000197208ENST00000200652ENSG00000197375ENST00000245407ENST00000448810ENST00000461013ENST00000475308ENSG00000233006ENST00000453876ENSG00000263597ENST00000584304CIL_0000HR_0003ENSMUSG00000018900ENSMUST00000019044ENSMUST00000136307ENSMUST00000152084ENSMUSG00000063652ENSMUST00000076493ENSMUST00000124221ENSMUST00000129301ENSMUST00000143352ENSMUSG00000080768ENSMUST00000119198ENSMUSG00000081098ENSMUST00000118476ENSMUSG00000082271ENSMUST00000118858ENSMUSG00000082380ENSMUST00000117666CIL_0000HR_0004ENSMUSG00000020334ENSMUST00000020586ENSMUST00000146351ENSMUST00000154369ENSMUSG00000063652ENSMUST00000076493ENSMUST00000124221ENSMUST00000129301ENSMUST00000143352ENSMUSG00000080768ENSMUST00000119198
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005335 ENSDART00000024342 N/A N/A N/A 0.234±0.00 N/A N/A 0.177±0.14 1.393±0.00 0.022±0.00 N/A 0.845±0.00 N/A N/A N/A
ENSDART00000138828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000145081 N/A N/A N/A 0.088±0.00 N/A N/A N/A 10.598±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000094112 ENSDART00000135034 N/A N/A N/A 3.981±1.38 N/A N/A 0.046±0.00 8.206±0.00 N/A N/A 1.164±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072682 ENST00000166534 3.400±0.00 N/A 2.971±0.00 1.066±0.13 3.876±0.20 2.446±1.25 3.453±0.04 N/A N/A 5.467±1.51 0.759±0.00 4.898±2.38 4.424±0.00 5.111±1.16
ENST00000360568 4.402±0.00 5.157±0.00 N/A 1.822±0.13 7.284±0.00 17.489±0.00 8.496±0.00 11.146±0.00 1.482±0.27 13.856±0.00 1.601±0.00 4.157±0.82 14.004±1.99 6.975±2.74
ENST00000379086 N/A N/A N/A N/A N/A 4.321±0.00 N/A 4.023±3.03 6.704±0.00 3.445±0.00 4.446±0.00 4.738±2.58 12.991±0.63 N/A
ENST00000379100 N/A N/A N/A N/A N/A 0.790±0.00 1.024±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000379104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000401867 N/A N/A N/A 0.473±0.00 N/A N/A N/A N/A 0.976±0.00 N/A N/A 1.628±0.70 2.595±0.11 1.735±0.00
ENST00000416053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474628 N/A N/A N/A N/A N/A N/A N/A N/A 1.816±0.00 N/A N/A N/A N/A N/A
ENST00000478055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197208 ENST00000200652 N/A N/A N/A 1.916±0.00 N/A N/A 0.641±0.00 N/A N/A 4.654±0.00 N/A 2.834±1.79 1.149±0.10 N/A
ENST00000425923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197375 ENST00000245407 0.701±0.00 N/A N/A 1.603±0.00 4.716±0.00 2.049±0.91 3.388±0.00 32.853±0.00 0.984±0.00 2.191±0.00 14.866±0.00 2.191±1.77 3.331±0.48 2.867±1.03
ENST00000415928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448810 N/A N/A N/A N/A N/A N/A N/A 2.504±0.00 N/A N/A N/A N/A N/A N/A
ENST00000461013 N/A N/A 1.790±0.00 0.290±0.00 0.551±0.00 0.202±0.00 0.268±0.15 N/A 0.189±0.08 N/A N/A N/A 0.185±0.00 N/A
ENST00000475308 N/A 1.021±0.00 N/A N/A 0.614±0.00 N/A N/A N/A N/A 1.275±0.00 N/A N/A N/A 0.908±0.00
ENST00000479605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233006 ENST00000453876 N/A N/A N/A N/A 4.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000263597 ENST00000584304 N/A 0.476±0.00 N/A 3.060±0.00 0.734±0.00 N/A 8.790±8.58 2.612±0.00 N/A N/A N/A 14.448±0.00 4.121±0.00 3.840±2.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018900 ENSMUST00000019044 6.813±1.67 19.922±5.95 13.891±0.27 4.662±0.86 8.823±3.03 10.242±2.36 6.618±1.45 73.318±10.81 4.006±2.78 8.558±0.73 2.124±0.85 11.826±5.78 24.252±11.41 7.540±3.88
ENSMUST00000136307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.974±0.00
ENSMUST00000152084 N/A N/A N/A 1.498±0.00 N/A N/A N/A N/A N/A N/A N/A 3.648±0.00 16.777±0.00 N/A
ENSMUSG00000063652 ENSMUST00000076493 0.538±0.14 1.082±0.45 4.871±0.15 0.427±0.25 0.401±0.00 1.960±1.26 0.180±0.04 1.020±0.14 0.631±0.45 0.529±0.35 0.117±0.05 1.117±0.72 0.915±0.50 27.827±13.24
ENSMUST00000124221 N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.01 N/A 0.120±0.00 0.557±0.00 0.901±0.08 4.816±0.00
ENSMUST00000129301 N/A N/A 3.282±0.46 0.244±0.00 0.873±0.00 N/A N/A N/A 0.897±0.26 N/A 0.224±0.08 1.038±0.10 0.867±0.23 4.482±0.00
ENSMUST00000143352 N/A N/A N/A N/A N/A N/A 0.230±0.04 1.100±0.23 N/A 1.042±0.36 N/A 0.748±0.00 0.871±0.12 5.411±0.00
ENSMUSG00000080768 ENSMUST00000119198 0.125±0.00 N/A 0.585±0.03 0.078±0.05 N/A 0.413±0.31 N/A 0.245±0.01 0.219±0.13 0.136±0.00 0.202±0.16 1.066±0.67 0.398±0.47 0.444±0.20
ENSMUSG00000081098 ENSMUST00000118476 N/A N/A N/A 10.302±0.00 N/A 113.178±0.00 N/A N/A N/A N/A N/A N/A N/A 3.111±0.00
ENSMUSG00000082271 ENSMUST00000118858 0.054±0.00 N/A 0.014±0.00 N/A 0.216±0.07 N/A N/A N/A 0.225±0.19 N/A N/A 0.088±0.03 0.111±0.09 0.075±0.02
ENSMUSG00000082380 ENSMUST00000117666 N/A N/A 0.073±0.04 N/A N/A N/A N/A N/A 0.184±0.11 N/A N/A N/A 0.384±0.32 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020334 ENSMUST00000020586 7.078±2.64 4.644±0.58 0.993±0.29 0.705±0.24 5.999±2.13 0.463±0.11 1.072±0.55 23.131±2.84 8.960±8.71 0.821±0.29 0.667±0.28 1.020±0.42 8.719±8.08 0.622±0.10
ENSMUST00000146351 N/A N/A N/A N/A N/A 0.421±0.00 1.442±0.00 N/A N/A N/A N/A 1.089±0.34 N/A N/A
ENSMUST00000154369 N/A N/A N/A 3.533±0.00 N/A N/A N/A N/A N/A N/A N/A 1.237±0.55 14.395±5.94 N/A
ENSMUSG00000063652 ENSMUST00000076493 0.538±0.14 1.082±0.45 4.871±0.15 0.427±0.25 0.401±0.00 1.960±1.26 0.180±0.04 1.020±0.14 0.631±0.45 0.529±0.35 0.117±0.05 1.117±0.72 0.915±0.50 27.827±13.24
ENSMUST00000124221 N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.01 N/A 0.120±0.00 0.557±0.00 0.901±0.08 4.816±0.00
ENSMUST00000129301 N/A N/A 3.282±0.46 0.244±0.00 0.873±0.00 N/A N/A N/A 0.897±0.26 N/A 0.224±0.08 1.038±0.10 0.867±0.23 4.482±0.00
ENSMUST00000143352 N/A N/A N/A N/A N/A N/A 0.230±0.04 1.100±0.23 N/A 1.042±0.36 N/A 0.748±0.00 0.871±0.12 5.411±0.00
ENSMUSG00000080768 ENSMUST00000119198 0.125±0.00 N/A 0.585±0.03 0.078±0.05 N/A 0.413±0.31 N/A 0.245±0.01 0.219±0.13 0.136±0.00 0.202±0.16 1.066±0.67 0.398±0.47 0.444±0.20

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