C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020801 Smg8-001 ENSMUSG00000020495 10090 - 11:87077732-87086774 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020801
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020801 4.544±1.18 3.876±0.64 5.971±0.37 5.947±2.99 4.131±0.62 3.211±0.19 2.267±0.23 3.580±0.19 3.698±1.77 4.530±0.26 2.601±0.14 5.384±1.21 6.772±2.75 3.567±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039L CIL_00039L_0002 CGP 11:87077732-87108708

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 ISS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0045859 ISS regulation of protein kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300917 SMG8-201 protein_coding Homo_sapiens 0 3746
ENST00000543872 SMG8-001 protein_coding Homo_sapiens 0 3746
ENST00000577660 CTD-2510F5.6-001 protein_coding Homo_sapiens 0 351
ENST00000578922 SMG8-002 protein_coding Homo_sapiens 0 2093
ENST00000580498 SMG8-005 processed_transcript Homo_sapiens 0 654
ENST00000582469 SMG8-003 protein_coding Homo_sapiens 0 937

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