C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00039L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061378-ENSDARG00000087393 CGP 7955 10:36261926-36280961
GeneTranscriptPositionBiotype
ENSDARG00000061378 (smg8)
smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans) 		ENSDART00000087477 (smg8-001) 36261926-36271940 protein_coding
ENSDARG00000087393 (prr11)
proline rich 11 		ENSDART00000082445 (prr11-201) 36273857-36280915 protein_coding
ENSDART00000139107 (prr11-002) 36279319-36280961 protein_coding
ENSDART00000143890 (prr11-001) 36273856-36280896 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00039L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020495-ENSMUSG00000020493 CGP 10090 11:87077732-87108708
GeneTranscriptPositionBiotype
ENSMUSG00000020493 (Prr11)
proline rich 11 		ENSMUST00000051395 (Prr11-001) 87089153-87108708 protein_coding
ENSMUSG00000020495 (Smg8)
smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans) 		ENSMUST00000020801 (Smg8-001) 87077732-87086774 protein_coding
ENSMUST00000143280 (Smg8-002) 87077736-87085382 protein_coding
ENSMUSG00000082507 (Gm9378)
predicted gene 9378 		ENSMUST00000120315 (Gm9378-001) 87078787-87079257 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00039L_0001ENSDARG00000061378ENSDART00000087477ENSDARG00000087393ENSDART00000082445ENSDART00000139107ENSDART00000143890CIL_00039L_0002ENSMUSG00000020493ENSMUST00000051395ENSMUSG00000020495ENSMUST00000020801ENSMUST00000143280ENSMUSG00000082507ENSMUST00000120315
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00039L_0001ENSDARG00000061378ENSDART00000087477ENSDARG00000087393ENSDART00000082445ENSDART00000139107ENSDART00000143890CIL_00039L_0002ENSMUSG00000020493ENSMUST00000051395ENSMUSG00000020495ENSMUST00000020801ENSMUSG00000082507ENSMUST00000120315
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000061378 ENSDART00000087477 N/A N/A N/A 4.619±2.47 N/A N/A 6.965±4.26 7.920±2.81 0.959±0.00 N/A 4.112±0.00 N/A N/A N/A
ENSDARG00000087393 ENSDART00000082445 N/A N/A N/A 0.672±0.48 N/A N/A 0.554±0.41 16.440±9.54 0.460±0.00 N/A 0.281±0.00 N/A N/A N/A
ENSDART00000139107 N/A N/A N/A 0.952±0.00 N/A N/A N/A N/A 0.175±0.00 N/A N/A N/A N/A N/A
ENSDART00000143890 N/A N/A N/A 0.714±0.31 N/A N/A 0.502±0.26 15.518±1.10 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020493 ENSMUST00000051395 0.751±0.38 0.175±0.13 0.333±0.06 1.596±1.24 0.342±0.18 0.893±0.14 0.150±0.06 0.089±0.05 3.715±4.34 0.327±0.10 0.064±0.03 1.353±0.47 2.265±1.68 2.774±1.21
ENSMUSG00000020495 ENSMUST00000020801 4.544±1.18 3.876±0.64 5.971±0.37 5.947±2.99 4.131±0.62 3.211±0.19 2.267±0.23 3.580±0.19 3.698±1.77 4.530±0.26 2.601±0.14 5.384±1.21 6.772±2.75 3.567±1.22
ENSMUST00000143280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082507 ENSMUST00000120315 0.799±0.40 0.908±0.48 0.716±0.09 1.177±0.37 2.262±1.00 2.167±1.25 0.819±0.52 0.597±0.18 0.788±0.41 1.132±0.25 0.119±0.03 2.564±1.47 0.294±0.16 0.626±0.32

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