C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMG8 nonsense mediated mRNA decay factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000300917 SMG8-201 ENSG00000167447 9606 + 17:59210010-59215247 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300917
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300917 1.784±0.00 3.645±0.00 0.249±0.00 2.821±0.92 1.790±0.15 1.727±0.05 1.873±0.51 1.801±1.32 1.716±0.68 1.056±0.56 1.933±0.00 3.910±0.67 4.956±0.42 5.294±0.90

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IMP:IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005829 TAS cytosol
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0045859 IMP regulation of protein kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020801 Smg8-001 protein_coding Mus_musculus 0 3746
ENSMUST00000143280 Smg8-002 protein_coding Mus_musculus 0 937

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