C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SAP30-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020826 Sap30l-001 ENSMUSG00000020519 10090 + 11:57801637-57810217 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020826
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020826 13.441±1.41 29.487±7.23 12.355±0.52 15.144±7.98 9.436±3.00 19.228±3.96 8.976±0.86 19.296±2.33 8.622±2.01 12.600±1.79 13.633±2.88 22.411±4.47 29.355±12.26 2.342±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C8 CIL_0009C8_0002 VISTA 11:57350678-57952744
CIL_00094E CIL_00094E_0002 VISTA 11:57350713-57952688
CIL_00099I CIL_00099I_0002 VISTA 11:57547462-58147793
CIL_00088D CIL_00088D_0002 VISTA 11:57627590-58231336
CIL_0001UJ CIL_0001UJ_0002 CGP 11:57645442-57810217
CIL_0001UK CIL_0001UK_0002 CGP 11:57801637-57832818

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297109 SAP30L-001 protein_coding Homo_sapiens 0 870
ENST00000426761 SAP30L-004 protein_coding Homo_sapiens 0 390
ENST00000440364 SAP30L-003 protein_coding Homo_sapiens 0 394
ENST00000517926 SAP30L-002 retained_intron Homo_sapiens 0 320
ENST00000519683 SAP30L-007 retained_intron Homo_sapiens 0 460
ENST00000520159 SAP30L-006 processed_transcript Homo_sapiens 0 545
ENST00000520731 SAP30L-009 processed_transcript Homo_sapiens 0 318
ENST00000523029 SAP30L-008 retained_intron Homo_sapiens 0 316
ENST00000523198 SAP30L-005 processed_transcript Homo_sapiens 0 556

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