C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 8b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020948 Abca8b-001 ENSMUSG00000020620 10090 - 11:109932190-109995845 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020948
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020948 1.082±0.41 0.807±0.30 2.897±0.39 0.756±0.19 1.300±0.53 0.430±0.18 1.680±0.23 0.249±0.15 10.304±7.27 2.686±0.59 2.824±0.46 0.643±0.24 0.296±0.18 0.098±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005743 IDA mitochondrial inner membrane
GO:0005886 IEA plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269080 ABCA8-001 protein_coding Homo_sapiens 0 2148
ENST00000284425 ABCA6-001 protein_coding Homo_sapiens 0 488
ENST00000340001 ABCA9-001 protein_coding Homo_sapiens 0 1013
ENST00000430352 ABCA8-201 protein_coding Homo_sapiens 0 3376
ENST00000453985 ABCA9-002 protein_coding Homo_sapiens 0 1013
ENST00000541225 ABCA8-005 retained_intron Homo_sapiens 0 2130
ENST00000586292 ABCA8-013 retained_intron Homo_sapiens 0 584
ENST00000586539 ABCA8-003 protein_coding Homo_sapiens 0 3450
ENST00000588458 ABCA8-014 retained_intron Homo_sapiens 0 274
ENST00000589533 ABCA8-004 non_stop_decay Homo_sapiens 0 1483
ENST00000589803 ABCA6-003 retained_intron Homo_sapiens 0 459
ENST00000589980 ABCA8-012 retained_intron Homo_sapiens 0 191
ENST00000615593 ABCA8-202 protein_coding Homo_sapiens 0 1478

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