C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FtsJ homolog 3 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427159 FTSJ3-001 ENSG00000108592 9606 - 17:63819433-63827671 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000427159
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000427159 17.116±0.00 16.721±0.00 6.113±4.34 6.633±4.92 11.492±9.03 5.324±0.00 11.414±8.29 5.681±1.43 3.837±1.59 9.122±7.89 21.997±2.18 12.474±2.48 19.233±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006Q4 CIL_0006Q4_0001 CGP 17:63773603-63830012
CIL_0006Q9 CIL_0006Q9_0001 CGP 17:63819433-63832026

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000453 IEA enzyme-directed rRNA 2'-O-methylation
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005730 IDA nucleolus
GO:0006364 IEA rRNA processing
GO:0008168 IEA methyltransferase activity
GO:0008649 IEA rRNA methyltransferase activity
GO:0030688 IEA preribosome, small subunit precursor
GO:0031167 IEA rRNA methylation
GO:0032259 IEA methylation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021048 Ftsj3-001 protein_coding Mus_musculus 0 2726
ENSMUST00000143729 Ftsj3-003 retained_intron Mus_musculus 0 455
ENSMUST00000154635 Ftsj3-005 retained_intron Mus_musculus 0 420
ENSMUST00000126938 Ftsj3-006 retained_intron Mus_musculus 0 315
ENSMUST00000127803 Ftsj3-004 retained_intron Mus_musculus 0 276
ENSMUST00000143884 Ftsj3-002 retained_intron Mus_musculus 0 259
ENSDART00000110585 ftsj-001 protein_coding Danio_rerio 0.00000000000008 84

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