C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021246 Snx11-002 ENSMUSG00000020876 10090 - 11:96767555-96777531 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021246
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021246 2.413±0.22 1.698±0.36 3.228±0.10 5.111±0.57 2.051±0.54 3.185±1.05 1.176±0.10 1.751±0.55 1.822±0.73 3.954±1.15 2.092±0.66 2.428±0.77 1.718±0.68 3.057±0.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608
CIL_0007WA CIL_0007WA_0002 VISTA 11:96526222-97127190
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 ISS endosome
GO:0006886 IBA intracellular protein transport
GO:0016020 IEA membrane
GO:0016050 ISS vesicle organization
GO:0035091 IBA phosphatidylinositol binding
GO:1901981 ISS phosphatidylinositol phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000393405 SNX11-001 protein_coding Homo_sapiens 0 839
ENST00000581705 SNX11-007 nonsense_mediated_decay Homo_sapiens 0 263
ENST00000584335 SNX11-010 protein_coding Homo_sapiens 0 837

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